(17 nodes) Mixed, incl. ISWI-type complex, and Histone H3-K36 methylation network (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	thumpd3	THUMP domain containing 3. (502 aa)
	LOC107100689	Zgc:103508. (205 aa)
	ENSCVAP00000009568	DUF4596 domain-containing protein. (132 aa)
	LOC107093072	Remodeling and spacing factor 1b, tandem duplicate 1. (1378 aa)
	gpatch8	G patch domain containing 8. (1490 aa)
	ENSCVAP00000013082	THAP-type domain-containing protein. (269 aa)
	USP34	Ubiquitin specific peptidase 34; Belongs to the peptidase C19 family. (3434 aa)
	Ptrh2	Peptidyl-tRNA hydrolase 2. (179 aa)
	LOC107084057	Ash1 (absent, small, or homeotic)-like (Drosophila). (2925 aa)
	phf3	PHD finger protein 3. (1653 aa)
	ENSCVAP00000018664	Uncharacterized protein. (129 aa)
	bptf	Bromodomain PHD finger transcription factor. (2927 aa)
	LOC107095513	Matrin-type domain-containing protein. (1103 aa)
	LOC107093101	Bromodomain PHD finger transcription factor. (2596 aa)
	ENSCVAP00000026477	Uncharacterized protein. (146 aa)
	setd5	SET domain containing 5. (1435 aa)
	ubr5	Ubiquitin protein ligase E3 component n-recognin 5. (2535 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000009568	Ptrh2	ENSCVAP00000009568	ENSCVAP00000014268	DUF4596 domain-containing protein.	Peptidyl-tRNA hydrolase 2.	0.566
ENSCVAP00000009568	setd5	ENSCVAP00000009568	ENSCVAP00000030251	DUF4596 domain-containing protein.	SET domain containing 5.	0.553
ENSCVAP00000013082	thumpd3	ENSCVAP00000013082	ENSCVAP00000000149	THAP-type domain-containing protein.	THUMP domain containing 3.	0.504
ENSCVAP00000018664	LOC107093072	ENSCVAP00000018664	ENSCVAP00000010239	Uncharacterized protein.	Remodeling and spacing factor 1b, tandem duplicate 1.	0.564
ENSCVAP00000018664	LOC107093101	ENSCVAP00000018664	ENSCVAP00000026183	Uncharacterized protein.	Bromodomain PHD finger transcription factor.	0.533
ENSCVAP00000018664	USP34	ENSCVAP00000018664	ENSCVAP00000013733	Uncharacterized protein.	Ubiquitin specific peptidase 34; Belongs to the peptidase C19 family.	0.570
ENSCVAP00000018664	bptf	ENSCVAP00000018664	ENSCVAP00000025696	Uncharacterized protein.	Bromodomain PHD finger transcription factor.	0.533
LOC107084057	LOC107093072	ENSCVAP00000015123	ENSCVAP00000010239	Ash1 (absent, small, or homeotic)-like (Drosophila).	Remodeling and spacing factor 1b, tandem duplicate 1.	0.488
LOC107084057	LOC107093101	ENSCVAP00000015123	ENSCVAP00000026183	Ash1 (absent, small, or homeotic)-like (Drosophila).	Bromodomain PHD finger transcription factor.	0.604
LOC107084057	USP34	ENSCVAP00000015123	ENSCVAP00000013733	Ash1 (absent, small, or homeotic)-like (Drosophila).	Ubiquitin specific peptidase 34; Belongs to the peptidase C19 family.	0.826
LOC107084057	bptf	ENSCVAP00000015123	ENSCVAP00000025696	Ash1 (absent, small, or homeotic)-like (Drosophila).	Bromodomain PHD finger transcription factor.	0.604
LOC107084057	phf3	ENSCVAP00000015123	ENSCVAP00000017813	Ash1 (absent, small, or homeotic)-like (Drosophila).	PHD finger protein 3.	0.580
LOC107084057	setd5	ENSCVAP00000015123	ENSCVAP00000030251	Ash1 (absent, small, or homeotic)-like (Drosophila).	SET domain containing 5.	0.418
LOC107084057	ubr5	ENSCVAP00000015123	ENSCVAP00000032095	Ash1 (absent, small, or homeotic)-like (Drosophila).	Ubiquitin protein ligase E3 component n-recognin 5.	0.563
LOC107093072	ENSCVAP00000018664	ENSCVAP00000010239	ENSCVAP00000018664	Remodeling and spacing factor 1b, tandem duplicate 1.	Uncharacterized protein.	0.564
LOC107093072	LOC107084057	ENSCVAP00000010239	ENSCVAP00000015123	Remodeling and spacing factor 1b, tandem duplicate 1.	Ash1 (absent, small, or homeotic)-like (Drosophila).	0.488
LOC107093072	LOC107093101	ENSCVAP00000010239	ENSCVAP00000026183	Remodeling and spacing factor 1b, tandem duplicate 1.	Bromodomain PHD finger transcription factor.	0.726
LOC107093072	bptf	ENSCVAP00000010239	ENSCVAP00000025696	Remodeling and spacing factor 1b, tandem duplicate 1.	Bromodomain PHD finger transcription factor.	0.726
LOC107093072	phf3	ENSCVAP00000010239	ENSCVAP00000017813	Remodeling and spacing factor 1b, tandem duplicate 1.	PHD finger protein 3.	0.461
LOC107093101	ENSCVAP00000018664	ENSCVAP00000026183	ENSCVAP00000018664	Bromodomain PHD finger transcription factor.	Uncharacterized protein.	0.533