STRINGSTRING
LOC107093479 LOC107093479 tmem240 tmem240 cpsf2 cpsf2 cstf2 cstf2 LOC107085466 LOC107085466 zc3h4 zc3h4 LOC107097122 LOC107097122 LOC107091493 LOC107091493 CPSF3 CPSF3 papolg papolg WDR33 WDR33 clp1 clp1 ENSCVAP00000017481 ENSCVAP00000017481 LOC107082895 LOC107082895 ENSCVAP00000018374 ENSCVAP00000018374 ENSCVAP00000018728 ENSCVAP00000018728 ENSCVAP00000019485 ENSCVAP00000019485 ENSCVAP00000028190 ENSCVAP00000028190 cpsf4 cpsf4 cstf3 cstf3 ENSCVAP00000032194 ENSCVAP00000032194
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC107093479FIP1 like 1b (S. cerevisiae). (541 aa)
tmem240Transmembrane protein 240a. (175 aa)
cpsf2Cleavage and polyadenylation specificity factor subunit 2. (787 aa)
cstf2Cleavage stimulation factor, 3' pre-RNA, subunit 2. (506 aa)
LOC107085466Uncharacterized protein. (785 aa)
zc3h4Zinc finger CCCH-type containing 4. (1274 aa)
LOC107097122Zinc finger CCCH-type containing 6. (947 aa)
LOC107091493Cleavage and polyadenylation specific factor 1. (1366 aa)
CPSF3Cleavage and polyadenylation specific factor 3. (690 aa)
papolgPoly(A) polymerase gamma. (849 aa)
WDR33WD repeat domain 33. (848 aa)
clp1Polyribonucleotide 5'-hydroxyl-kinase Clp1; Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of double-stranded RNA (dsRNA), single-stranded RNA (ssRNA), double stranded DNA (dsDNA) and double-stranded DNA:RNA hybrids. dsRNA is phosphorylated more efficiently than dsDNA, and the RNA component of a DNA:RNA hybrid is phosphorylated more efficiently than the DNA component. Appears to have roles in both tRNA splicing and mRNA 3'-end formation. Component of the tRNA splicing endonuclease complex. Phosphorylates the 5'-terminus of the tRNA 3'-exon during tRNA splicing; thi [...] (441 aa)
ENSCVAP00000017481CID domain-containing protein. (126 aa)
LOC107082895PCF11 cleavage and polyadenylation factor subunit. (1276 aa)
ENSCVAP00000018374Uncharacterized protein. (149 aa)
ENSCVAP00000018728Cleavage and polyadenylation specific factor 3. (329 aa)
ENSCVAP00000019485Uncharacterized protein. (188 aa)
ENSCVAP00000028190Symplekin. (550 aa)
cpsf4Cleavage and polyadenylation specific factor 4. (265 aa)
cstf3Cleavage stimulation factor, 3' pre-RNA, subunit 3. (716 aa)
ENSCVAP00000032194Lactamase_B domain-containing protein. (134 aa)
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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