(31 nodes) Transport of the SLBP independent Mature mRNA network (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	nup35	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (294 aa)
	nup85	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (654 aa)
	nup58	Nucleoporin 58. (592 aa)
	nup205	Nucleoporin 205. (1988 aa)
	rae1	Ribonucleic acid export 1. (368 aa)
	nup107	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (878 aa)
	ahctf1	AT hook containing transcription factor 1. (1820 aa)
	nup50	Nucleoporin 50. (447 aa)
	nup42	C3H1-type domain-containing protein. (407 aa)
	nup93	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (820 aa)
	nup160	Nucleoporin 160. (1142 aa)
	ndc1	NDC1 transmembrane nucleoporin. (669 aa)
	nup133	Nucleoporin 133. (1135 aa)
	NUP54	Nucleoporin 54. (566 aa)
	aaas	Achalasia, adrenocortical insufficiency, alacrimia. (518 aa)
	ranbp2	RAN binding protein 2. (3248 aa)
	LOC107091957	Translocated promoter region b, nuclear basket protein. (2192 aa)
	ENSCVAP00000015390	Uncharacterized protein. (1019 aa)
	nup155	Nucleoporin 155. (1358 aa)
	ENSCVAP00000020777	Nucleoporin 88. (504 aa)
	sec13	SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family. (320 aa)
	nup210	Nucleoporin 210. (1891 aa)
	LOC107097106	Nuclear receptor coactivator 5. (443 aa)
	nup188	Nucleoporin 188. (1724 aa)
	nup37	Nucleoporin 37. (326 aa)
	NUP62	Nucleoporin 62. (533 aa)
	nup98	Nucleoporin 98. (1810 aa)
	LOC107099325	Uncharacterized protein. (425 aa)
	nup153	Nucleoporin 153. (1409 aa)
	nup43	Nucleoporin 43. (370 aa)
	gle1	GLE1 RNA export mediator. (725 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000015390	ENSCVAP00000020777	ENSCVAP00000015390	ENSCVAP00000020777	Uncharacterized protein.	Nucleoporin 88.	0.974
ENSCVAP00000015390	LOC107091957	ENSCVAP00000015390	ENSCVAP00000014103	Uncharacterized protein.	Translocated promoter region b, nuclear basket protein.	0.832
ENSCVAP00000015390	LOC107097106	ENSCVAP00000015390	ENSCVAP00000027057	Uncharacterized protein.	Nuclear receptor coactivator 5.	0.947
ENSCVAP00000015390	LOC107099325	ENSCVAP00000015390	ENSCVAP00000030351	Uncharacterized protein.	Uncharacterized protein.	0.947
ENSCVAP00000015390	NUP54	ENSCVAP00000015390	ENSCVAP00000013037	Uncharacterized protein.	Nucleoporin 54.	0.984
ENSCVAP00000015390	NUP62	ENSCVAP00000015390	ENSCVAP00000028737	Uncharacterized protein.	Nucleoporin 62.	0.990
ENSCVAP00000015390	aaas	ENSCVAP00000015390	ENSCVAP00000013379	Uncharacterized protein.	Achalasia, adrenocortical insufficiency, alacrimia.	0.943
ENSCVAP00000015390	ahctf1	ENSCVAP00000015390	ENSCVAP00000006762	Uncharacterized protein.	AT hook containing transcription factor 1.	0.858
ENSCVAP00000015390	gle1	ENSCVAP00000015390	ENSCVAP00000032093	Uncharacterized protein.	GLE1 RNA export mediator.	0.988
ENSCVAP00000015390	ndc1	ENSCVAP00000015390	ENSCVAP00000010292	Uncharacterized protein.	NDC1 transmembrane nucleoporin.	0.959
ENSCVAP00000015390	nup107	ENSCVAP00000015390	ENSCVAP00000004908	Uncharacterized protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.996
ENSCVAP00000015390	nup133	ENSCVAP00000015390	ENSCVAP00000011656	Uncharacterized protein.	Nucleoporin 133.	0.994
ENSCVAP00000015390	nup153	ENSCVAP00000015390	ENSCVAP00000031412	Uncharacterized protein.	Nucleoporin 153.	0.983
ENSCVAP00000015390	nup155	ENSCVAP00000015390	ENSCVAP00000018603	Uncharacterized protein.	Nucleoporin 155.	0.988
ENSCVAP00000015390	nup160	ENSCVAP00000015390	ENSCVAP00000010044	Uncharacterized protein.	Nucleoporin 160.	0.973
ENSCVAP00000015390	nup188	ENSCVAP00000015390	ENSCVAP00000028322	Uncharacterized protein.	Nucleoporin 188.	0.966
ENSCVAP00000015390	nup205	ENSCVAP00000015390	ENSCVAP00000003113	Uncharacterized protein.	Nucleoporin 205.	0.989
ENSCVAP00000015390	nup210	ENSCVAP00000015390	ENSCVAP00000027010	Uncharacterized protein.	Nucleoporin 210.	0.985
ENSCVAP00000015390	nup35	ENSCVAP00000015390	ENSCVAP00000000836	Uncharacterized protein.	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family.	0.964
ENSCVAP00000015390	nup37	ENSCVAP00000015390	ENSCVAP00000028733	Uncharacterized protein.	Nucleoporin 37.	0.959