(17 nodes) Postmitotic nuclear pore complex (NPC) reformation network (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	nup35	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (294 aa)
	nup85	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (654 aa)
	nup205	Nucleoporin 205. (1988 aa)
	nup107	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (878 aa)
	ahctf1	AT hook containing transcription factor 1. (1820 aa)
	nup93	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (820 aa)
	nup160	Nucleoporin 160. (1142 aa)
	ndc1	NDC1 transmembrane nucleoporin. (669 aa)
	nup133	Nucleoporin 133. (1135 aa)
	aaas	Achalasia, adrenocortical insufficiency, alacrimia. (518 aa)
	ranbp2	RAN binding protein 2. (3248 aa)
	nup155	Nucleoporin 155. (1358 aa)
	sec13	SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family. (320 aa)
	nup210	Nucleoporin 210. (1891 aa)
	nup188	Nucleoporin 188. (1724 aa)
	nup37	Nucleoporin 37. (326 aa)
	nup43	Nucleoporin 43. (370 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
aaas	ahctf1	ENSCVAP00000013379	ENSCVAP00000006762	Achalasia, adrenocortical insufficiency, alacrimia.	AT hook containing transcription factor 1.	0.676
aaas	ndc1	ENSCVAP00000013379	ENSCVAP00000010292	Achalasia, adrenocortical insufficiency, alacrimia.	NDC1 transmembrane nucleoporin.	0.975
aaas	nup107	ENSCVAP00000013379	ENSCVAP00000004908	Achalasia, adrenocortical insufficiency, alacrimia.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.975
aaas	nup133	ENSCVAP00000013379	ENSCVAP00000011656	Achalasia, adrenocortical insufficiency, alacrimia.	Nucleoporin 133.	0.915
aaas	nup155	ENSCVAP00000013379	ENSCVAP00000018603	Achalasia, adrenocortical insufficiency, alacrimia.	Nucleoporin 155.	0.987
aaas	nup160	ENSCVAP00000013379	ENSCVAP00000010044	Achalasia, adrenocortical insufficiency, alacrimia.	Nucleoporin 160.	0.933
aaas	nup188	ENSCVAP00000013379	ENSCVAP00000028322	Achalasia, adrenocortical insufficiency, alacrimia.	Nucleoporin 188.	0.987
aaas	nup205	ENSCVAP00000013379	ENSCVAP00000003113	Achalasia, adrenocortical insufficiency, alacrimia.	Nucleoporin 205.	0.979
aaas	nup210	ENSCVAP00000013379	ENSCVAP00000027010	Achalasia, adrenocortical insufficiency, alacrimia.	Nucleoporin 210.	0.950
aaas	nup35	ENSCVAP00000013379	ENSCVAP00000000836	Achalasia, adrenocortical insufficiency, alacrimia.	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family.	0.964
aaas	nup37	ENSCVAP00000013379	ENSCVAP00000028733	Achalasia, adrenocortical insufficiency, alacrimia.	Nucleoporin 37.	0.901
aaas	nup43	ENSCVAP00000013379	ENSCVAP00000031906	Achalasia, adrenocortical insufficiency, alacrimia.	Nucleoporin 43.	0.936
aaas	nup85	ENSCVAP00000013379	ENSCVAP00000001980	Achalasia, adrenocortical insufficiency, alacrimia.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.962
aaas	nup93	ENSCVAP00000013379	ENSCVAP00000009000	Achalasia, adrenocortical insufficiency, alacrimia.	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	0.975
aaas	ranbp2	ENSCVAP00000013379	ENSCVAP00000013540	Achalasia, adrenocortical insufficiency, alacrimia.	RAN binding protein 2.	0.994
aaas	sec13	ENSCVAP00000013379	ENSCVAP00000023654	Achalasia, adrenocortical insufficiency, alacrimia.	SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family.	0.932
ahctf1	aaas	ENSCVAP00000006762	ENSCVAP00000013379	AT hook containing transcription factor 1.	Achalasia, adrenocortical insufficiency, alacrimia.	0.676
ahctf1	ndc1	ENSCVAP00000006762	ENSCVAP00000010292	AT hook containing transcription factor 1.	NDC1 transmembrane nucleoporin.	0.885
ahctf1	nup107	ENSCVAP00000006762	ENSCVAP00000004908	AT hook containing transcription factor 1.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.993
ahctf1	nup133	ENSCVAP00000006762	ENSCVAP00000011656	AT hook containing transcription factor 1.	Nucleoporin 133.	0.991