(8 nodes) Nuclear pore outer ring network (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	nup85	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (654 aa)
	nup107	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (878 aa)
	nup160	Nucleoporin 160. (1142 aa)
	nup133	Nucleoporin 133. (1135 aa)
	ranbp2	RAN binding protein 2. (3248 aa)
	sec13	SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family. (320 aa)
	nup37	Nucleoporin 37. (326 aa)
	nup43	Nucleoporin 43. (370 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
nup107	nup133	ENSCVAP00000004908	ENSCVAP00000011656	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nucleoporin 133.	0.999
nup107	nup160	ENSCVAP00000004908	ENSCVAP00000010044	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nucleoporin 160.	0.999
nup107	nup37	ENSCVAP00000004908	ENSCVAP00000028733	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nucleoporin 37.	0.999
nup107	nup43	ENSCVAP00000004908	ENSCVAP00000031906	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nucleoporin 43.	0.999
nup107	nup85	ENSCVAP00000004908	ENSCVAP00000001980	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.999
nup107	ranbp2	ENSCVAP00000004908	ENSCVAP00000013540	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	RAN binding protein 2.	0.999
nup107	sec13	ENSCVAP00000004908	ENSCVAP00000023654	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family.	0.999
nup133	nup107	ENSCVAP00000011656	ENSCVAP00000004908	Nucleoporin 133.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.999
nup133	nup160	ENSCVAP00000011656	ENSCVAP00000010044	Nucleoporin 133.	Nucleoporin 160.	0.998
nup133	nup37	ENSCVAP00000011656	ENSCVAP00000028733	Nucleoporin 133.	Nucleoporin 37.	0.999
nup133	nup43	ENSCVAP00000011656	ENSCVAP00000031906	Nucleoporin 133.	Nucleoporin 43.	0.999
nup133	nup85	ENSCVAP00000011656	ENSCVAP00000001980	Nucleoporin 133.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.999
nup133	ranbp2	ENSCVAP00000011656	ENSCVAP00000013540	Nucleoporin 133.	RAN binding protein 2.	0.999
nup133	sec13	ENSCVAP00000011656	ENSCVAP00000023654	Nucleoporin 133.	SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family.	0.999
nup160	nup107	ENSCVAP00000010044	ENSCVAP00000004908	Nucleoporin 160.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.999
nup160	nup133	ENSCVAP00000010044	ENSCVAP00000011656	Nucleoporin 160.	Nucleoporin 133.	0.998
nup160	nup37	ENSCVAP00000010044	ENSCVAP00000028733	Nucleoporin 160.	Nucleoporin 37.	0.998
nup160	nup43	ENSCVAP00000010044	ENSCVAP00000031906	Nucleoporin 160.	Nucleoporin 43.	0.999
nup160	nup85	ENSCVAP00000010044	ENSCVAP00000001980	Nucleoporin 160.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.997
nup160	ranbp2	ENSCVAP00000010044	ENSCVAP00000013540	Nucleoporin 160.	RAN binding protein 2.	0.999