STRINGSTRING
fancd2 fancd2 rpa3 rpa3 EME2 EME2 ENSCVAP00000000721 ENSCVAP00000000721 mcm7 mcm7 dbf4 dbf4 timeless timeless ENSCVAP00000000885 ENSCVAP00000000885 ENSCVAP00000000928 ENSCVAP00000000928 ENSCVAP00000000934 ENSCVAP00000000934 bivm bivm mcm5 mcm5 ENSCVAP00000001347 ENSCVAP00000001347 dmc1 dmc1 mcm10 mcm10 chek1 chek1 LOC107091169 LOC107091169 atrip atrip LOC107099756 LOC107099756 pole2 pole2 tp53bp1 tp53bp1 mcm3 mcm3 pcna pcna msh3 msh3 gins1 gins1 neil3 neil3 fancf fancf rad51d rad51d cdc7 cdc7 mcmbp mcmbp rpl10a rpl10a msh2 msh2 fanci fanci wdhd1 wdhd1 rmi1 rmi1 slf1 slf1 fbh1 fbh1 ENSCVAP00000005887 ENSCVAP00000005887 ENSCVAP00000006422 ENSCVAP00000006422 LOC107103120 LOC107103120 msh5 msh5 rad54b rad54b LOC107098698 LOC107098698 top3a top3a LOC107092444 LOC107092444 lig1 lig1 polk polk cenpx cenpx pole pole ENSCVAP00000009946 ENSCVAP00000009946 Rbbp8 Rbbp8 ENSCVAP00000010146 ENSCVAP00000010146 spo11 spo11 orc1 orc1 LOC107088102 LOC107088102 PIEZO2 PIEZO2 ENSCVAP00000011755 ENSCVAP00000011755 Atm Atm CDCA7L CDCA7L pola1 pola1 eme1 eme1 LOC107101209 LOC107101209 poli poli LOC107082497 LOC107082497 fancm fancm orc2 orc2 prim1 prim1 chtf8 chtf8 bard1 bard1 fancb fancb rmi2 rmi2 Polh Polh mad2l2 mad2l2 rhno1 rhno1 fancl fancl rad17 rad17 rpa2 rpa2 LOC107099910 LOC107099910 CLSPN CLSPN DCLRE1B DCLRE1B ENSCVAP00000014940 ENSCVAP00000014940 Mcm9 Mcm9 MCMDC2 MCMDC2 mus81 mus81 cdc45 cdc45 XRCC3 XRCC3 ENSCVAP00000015397 ENSCVAP00000015397 rev1 rev1 cdca7 cdca7 pms2 pms2 pole4 pole4 rpa1 rpa1 ENSCVAP00000016453 ENSCVAP00000016453 mcph1 mcph1 stn1 stn1 rad54l rad54l ercc1 ercc1 dscc1 dscc1 polq polq gins3 gins3 rfc4 rfc4 helq helq gins2 gins2 xpa xpa prim2 prim2 ENSCVAP00000017542 ENSCVAP00000017542 gins4 gins4 pold4 pold4 Top3b Top3b msh4 msh4 apex2 apex2 faap24 faap24 Slx4 Slx4 ENSCVAP00000019055 ENSCVAP00000019055 rfc2 rfc2 mdc1 mdc1 ENSCVAP00000019159 ENSCVAP00000019159 mlh3 mlh3 orc4 orc4 pole3 pole3 rev3l rev3l LOC107087852 LOC107087852 LOC107089545 LOC107089545 Gen1 Gen1 nbn nbn nthl1 nthl1 fen1 fen1 BRIP1 BRIP1 Ankrd12 Ankrd12 pold2 pold2 mlh1 mlh1 cdt1 cdt1 pold1 pold1 ercc4 ercc4 MPHOSPH9 MPHOSPH9 rfc1 rfc1 rad52 rad52 msh6 msh6 recql4 recql4 LOC107089962 LOC107089962 topbp1 topbp1 hus1 hus1 pms1 pms1 dna2 dna2 ENSCVAP00000026260 ENSCVAP00000026260 fancg fancg pola2 pola2 ENSCVAP00000027358 ENSCVAP00000027358 tipin tipin ercc5 ercc5 cdc6 cdc6 rfc3 rfc3 rad50 rad50 ten1 ten1 recql5 recql5 LOC107087406 LOC107087406 chtf18 chtf18 exd2 exd2 mcm4 mcm4 rad1 rad1 mre11 mre11 rad51 rad51 Piezo1 Piezo1 rfc5 rfc5 palb2 palb2 faap100 faap100 mcm2 mcm2 atr atr orc5 orc5 mcm6 mcm6 orc3 orc3 rad9a rad9a dclre1a dclre1a brca1 brca1 apex1 apex1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
fancd2FA complementation group D2. (1437 aa)
rpa3Replication protein A3. (122 aa)
EME2ERCC4 domain-containing protein. (448 aa)
ENSCVAP00000000721Uncharacterized protein. (212 aa)
mcm7DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...] (727 aa)
dbf4DBF4 zinc finger. (606 aa)
timelessTimeless circadian clock. (1251 aa)
ENSCVAP00000000885Rad51 domain-containing protein. (153 aa)
ENSCVAP00000000928Piezo_RRas_bdg domain-containing protein. (310 aa)
ENSCVAP00000000934Uncharacterized protein. (301 aa)
bivmBasic, immunoglobulin-like variable motif containing. (496 aa)
mcm5DNA helicase; Belongs to the MCM family. (738 aa)
ENSCVAP00000001347SCY domain-containing protein. (126 aa)
dmc1DNA meiotic recombinase 1; Belongs to the RecA family. (261 aa)
mcm10Minichromosome maintenance 10 replication initiation factor. (851 aa)
chek1Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (464 aa)
LOC107091169ATPase family AAA domain containing 5a. (1526 aa)
atripUncharacterized protein. (773 aa)
LOC107099756DBF4-type domain-containing protein. (786 aa)
pole2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (529 aa)
tp53bp1Tumor protein p53 binding protein, 1. (1349 aa)
mcm3DNA helicase; Belongs to the MCM family. (814 aa)
pcnaProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
msh3MutS homolog 3 (E. coli); Component of the post-replicative DNA mismatch repair system (MMR). (929 aa)
gins1GINS complex subunit 1 (Psf1 homolog). (189 aa)
neil3Nei-like DNA glycosylase 3. (580 aa)
fancfFA complementation group F. (341 aa)
rad51dRAD51 paralog D. (350 aa)
cdc7Cell division cycle 7 homolog (S. cerevisiae). (555 aa)
mcmbpMinichromosome maintenance complex binding protein. (630 aa)
rpl10aRibosomal protein; Belongs to the universal ribosomal protein uL1 family. (216 aa)
msh2DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (937 aa)
fanciFA complementation group I. (1308 aa)
wdhd1WD repeat and HMG-box DNA binding protein 1. (1064 aa)
rmi1RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae). (643 aa)
slf1SMC5-SMC6 complex localization factor 1. (877 aa)
fbh1F-box DNA helicase 1. (882 aa)
ENSCVAP00000005887XPGI domain-containing protein. (618 aa)
ENSCVAP00000006422Tudor domain containing 3. (116 aa)
LOC107103120SLX1 homolog B, structure-specific endonuclease subunit. (218 aa)
msh5MutS homolog 5. (680 aa)
rad54bRAD54 homolog B. (871 aa)
LOC107098698Minichromosome maintenance 8 homologous recombination repair factor; Belongs to the MCM family. (428 aa)
top3aDNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (1026 aa)
LOC107092444Polymerase (DNA-directed), delta 3, accessory subunit. (439 aa)
lig1DNA ligase. (1004 aa)
polkPolymerase (DNA directed) kappa. (905 aa)
cenpxCentromere protein X. (114 aa)
poleDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2017 aa)
ENSCVAP00000009946MCM_OB domain-containing protein. (197 aa)
Rbbp8SAE2 domain-containing protein. (75 aa)
ENSCVAP00000010146Tower domain-containing protein. (2271 aa)
spo11SPO11 initiator of meiotic double stranded breaks. (387 aa)
orc1Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. (854 aa)
LOC107088102Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (670 aa)
PIEZO2Piezo type mechanosensitive ion channel component 2. (1161 aa)
ENSCVAP00000011755TAN domain-containing protein. (119 aa)
AtmUncharacterized protein. (145 aa)
CDCA7Lzf-4CXXC_R1 domain-containing protein. (405 aa)
pola1DNA polymerase. (1420 aa)
eme1Essential meiotic structure-specific endonuclease 1. (522 aa)
LOC107101209Ubiquitin-conjugating enzyme E2T (putative). (194 aa)
poliPolymerase (DNA directed) iota. (618 aa)
LOC107082497Tudor domain containing 3. (759 aa)
fancmUncharacterized protein. (1764 aa)
orc2Origin recognition complex, subunit 2. (536 aa)
prim1DNA primase; Belongs to the eukaryotic-type primase small subunit family. (425 aa)
chtf8CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae). (131 aa)
bard1BRCA1 associated RING domain 1. (815 aa)
fancbFA complementation group B. (726 aa)
rmi2RecQ mediated genome instability 2. (146 aa)
PolhPolymerase (DNA directed), eta. (298 aa)
mad2l2Mitotic arrest deficient 2 like 2. (210 aa)
rhno1Si:ch73-352p4.5. (287 aa)
fanclFA complementation group L. (371 aa)
rad17RAD17 checkpoint clamp loader component. (493 aa)
rpa2Replication protein A2. (278 aa)
LOC107099910BLM RecQ like helicase. (1091 aa)
CLSPNClaspin. (1190 aa)
DCLRE1BDNA cross-link repair 1B. (460 aa)
ENSCVAP00000014940Uncharacterized protein. (119 aa)
Mcm9MCM domain-containing protein; Belongs to the MCM family. (263 aa)
MCMDC2Minichromosome maintenance domain containing 2. (680 aa)
mus81MUS81 structure-specific endonuclease subunit. (608 aa)
cdc45CDC45 cell division cycle 45 homolog (S. cerevisiae). (566 aa)
XRCC3X-ray repair complementing defective repair in Chinese hamster cells 3. (454 aa)
ENSCVAP00000015397Uncharacterized protein. (86 aa)
rev1REV1 DNA directed polymerase. (1355 aa)
cdca7Cell division cycle associated 7a. (394 aa)
pms2PMS1 homolog 2, mismatch repair system component. (844 aa)
pole4Polymerase (DNA-directed), epsilon 4, accessory subunit. (129 aa)
rpa1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (606 aa)
ENSCVAP00000016453BRCT domain-containing protein. (121 aa)
mcph1Microcephalin 1. (702 aa)
stn1STN1 subunit of CST complex. (350 aa)
rad54lRAD54 like. (564 aa)
ercc1Excision repair cross-complementation group 1. (351 aa)
dscc1DNA replication and sister chromatid cohesion 1. (390 aa)
polqPolymerase (DNA directed), theta. (2106 aa)
gins3GINS complex subunit 3. (211 aa)
rfc4Replication factor C (activator 1) 4. (357 aa)
helqHelicase, POLQ like. (897 aa)
gins2DNA replication complex GINS protein PSF2; Belongs to the GINS2/PSF2 family. (186 aa)
xpaXeroderma pigmentosum, complementation group A. (275 aa)
prim2DNA primase large subunit; Regulatory subunit of the DNA primase complex and component of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which play an essential role in the initiation of DNA synthesis. The primase subunit of the polymerase alpha complex initiates DNA synthesis by oligomerising short RNA primers on both leading and lagging strands. (505 aa)
ENSCVAP00000017542Fanconi_A_N domain-containing protein. (242 aa)
gins4DNA replication complex GINS protein SLD5; The GINS complex plays an essential role in the initiation of DNA replication; Belongs to the GINS4/SLD5 family. (224 aa)
pold4Si:dkey-28b4.7. (107 aa)
Top3bDNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (130 aa)
msh4MutS homolog 4. (766 aa)
apex2DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. (572 aa)
faap24FA core complex associated protein 24. (218 aa)
Slx4BTB domain-containing protein. (1002 aa)
ENSCVAP00000019055Uncharacterized protein. (256 aa)
rfc2Replication factor C (activator 1) 2. (373 aa)
mdc1Uncharacterized protein. (1864 aa)
ENSCVAP00000019159Methionine sulfoxide reductase B1b. (252 aa)
mlh3MutL homolog 3 (E. coli). (1087 aa)
orc4Origin recognition complex subunit 4; Component of the origin recognition complex (ORC) that binds origins of replication; Belongs to the ORC4 family. (447 aa)
pole3Polymerase (DNA directed), epsilon 3 (p17 subunit). (146 aa)
rev3lREV3 like, DNA directed polymerase zeta catalytic subunit. (2776 aa)
LOC107087852NTF2 domain-containing protein. (128 aa)
LOC107089545Si:ch211-141o9.10. (326 aa)
Gen1Chromo_2 domain-containing protein. (523 aa)
nbnNibrin. (835 aa)
nthl1Endonuclease III-like protein 1; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N-glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines; Belongs to the Nth/MutY family. (313 aa)
fen1Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (380 aa)
BRIP1BRCA1 interacting protein C-terminal helicase 1. (796 aa)
Ankrd12ANK_REP_REGION domain-containing protein. (438 aa)
pold2Polymerase (DNA directed), delta 2, regulatory subunit. (487 aa)
mlh1MutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli). (719 aa)
cdt1Chromatin licensing and DNA replication factor 1. (459 aa)
pold1DNA polymerase. (1105 aa)
ercc4Excision repair cross-complementation group 4. (885 aa)
MPHOSPH9M-phase phosphoprotein 9. (1240 aa)
rfc1Replication factor C subunit 1. (1159 aa)
rad52RAD52 homolog, DNA repair protein. (374 aa)
msh6DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (1330 aa)
recql4RecQ helicase-like 4. (942 aa)
LOC107089962Zgc:110269. (342 aa)
topbp1DNA topoisomerase II binding protein 1. (1503 aa)
hus1Checkpoint protein; Belongs to the HUS1 family. (285 aa)
pms1PMS1 homolog 1, mismatch repair system component. (845 aa)
dna2DNA replication helicase/nuclease 2. (1358 aa)
ENSCVAP00000026260FA complementation group C. (427 aa)
fancgFA complementation group G. (522 aa)
pola2DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. (604 aa)
ENSCVAP00000027358Uncharacterized protein. (703 aa)
tipinTIMELESS-interacting protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family. (507 aa)
ercc5Excision repair cross-complementation group 5. (1006 aa)
cdc6Cell division control protein; Involved in the initiation of DNA replication. Also participates in checkpoint controls that ensure DNA replication is completed before mitosis is initiated; Belongs to the CDC6/cdc18 family. (569 aa)
rfc3Replication factor C (activator 1) 3. (356 aa)
rad50RAD50 homolog, double strand break repair protein. (1274 aa)
ten1TEN1 subunit of CST complex. (139 aa)
recql5RecQ helicase-like 5. (1010 aa)
LOC107087406Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family. (911 aa)
chtf18AAA domain-containing protein. (920 aa)
exd2Exonuclease 3'-5' domain containing 2. (671 aa)
mcm4DNA helicase; Belongs to the MCM family. (853 aa)
rad1RAD1 homolog (S. pombe). (279 aa)
mre11Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (692 aa)
rad51DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] (339 aa)
Piezo1Piezo_RRas_bdg domain-containing protein. (408 aa)
rfc5Replication factor C (activator 1) 5. (335 aa)
palb2PALB2_WD40 domain-containing protein. (1325 aa)
faap100Uncharacterized protein. (791 aa)
mcm2DNA helicase; Belongs to the MCM family. (878 aa)
atrATR serine/threonine kinase; Belongs to the PI3/PI4-kinase family. (2502 aa)
orc5Origin recognition complex, subunit 5. (442 aa)
mcm6DNA helicase; Belongs to the MCM family. (824 aa)
orc3Origin recognition complex, subunit 3. (679 aa)
rad9aCell cycle checkpoint control protein; Belongs to the rad9 family. (389 aa)
dclre1aDNA cross-link repair 1A (PSO2 homolog, S. cerevisiae). (891 aa)
brca1Uncharacterized protein. (1314 aa)
apex1DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. (310 aa)
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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