20 items (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	fancd2	FA complementation group D2. (1437 aa)
	fancf	FA complementation group F. (341 aa)
	rpl10a	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family. (216 aa)
	fanci	FA complementation group I. (1308 aa)
	LOC107103120	SLX1 homolog B, structure-specific endonuclease subunit. (218 aa)
	eme1	Essential meiotic structure-specific endonuclease 1. (522 aa)
	LOC107101209	Ubiquitin-conjugating enzyme E2T (putative). (194 aa)
	fancm	Uncharacterized protein. (1764 aa)
	fancb	FA complementation group B. (726 aa)
	fancl	FA complementation group L. (371 aa)
	mus81	MUS81 structure-specific endonuclease subunit. (608 aa)
	ENSCVAP00000017542	Fanconi_A_N domain-containing protein. (242 aa)
	faap24	FA core complex associated protein 24. (218 aa)
	Slx4	BTB domain-containing protein. (1002 aa)
	LOC107087852	NTF2 domain-containing protein. (128 aa)
	ENSCVAP00000026260	FA complementation group C. (427 aa)
	fancg	FA complementation group G. (522 aa)
	LOC107087406	Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family. (911 aa)
	faap100	Uncharacterized protein. (791 aa)
	dclre1a	DNA cross-link repair 1A (PSO2 homolog, S. cerevisiae). (891 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000017542	ENSCVAP00000026260	ENSCVAP00000017542	ENSCVAP00000026260	Fanconi_A_N domain-containing protein.	FA complementation group C.	0.997
ENSCVAP00000017542	LOC107087406	ENSCVAP00000017542	ENSCVAP00000028572	Fanconi_A_N domain-containing protein.	Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.	0.694
ENSCVAP00000017542	LOC107101209	ENSCVAP00000017542	ENSCVAP00000012705	Fanconi_A_N domain-containing protein.	Ubiquitin-conjugating enzyme E2T (putative).	0.957
ENSCVAP00000017542	LOC107103120	ENSCVAP00000017542	ENSCVAP00000006986	Fanconi_A_N domain-containing protein.	SLX1 homolog B, structure-specific endonuclease subunit.	0.617
ENSCVAP00000017542	Slx4	ENSCVAP00000017542	ENSCVAP00000018954	Fanconi_A_N domain-containing protein.	BTB domain-containing protein.	0.807
ENSCVAP00000017542	dclre1a	ENSCVAP00000017542	ENSCVAP00000031656	Fanconi_A_N domain-containing protein.	DNA cross-link repair 1A (PSO2 homolog, S. cerevisiae).	0.742
ENSCVAP00000017542	eme1	ENSCVAP00000017542	ENSCVAP00000012079	Fanconi_A_N domain-containing protein.	Essential meiotic structure-specific endonuclease 1.	0.674
ENSCVAP00000017542	faap100	ENSCVAP00000017542	ENSCVAP00000030317	Fanconi_A_N domain-containing protein.	Uncharacterized protein.	0.973
ENSCVAP00000017542	faap24	ENSCVAP00000017542	ENSCVAP00000018633	Fanconi_A_N domain-containing protein.	FA core complex associated protein 24.	0.995
ENSCVAP00000017542	fancb	ENSCVAP00000017542	ENSCVAP00000013651	Fanconi_A_N domain-containing protein.	FA complementation group B.	0.997
ENSCVAP00000017542	fancd2	ENSCVAP00000017542	ENSCVAP00000000141	Fanconi_A_N domain-containing protein.	FA complementation group D2.	0.979
ENSCVAP00000017542	fancf	ENSCVAP00000017542	ENSCVAP00000003614	Fanconi_A_N domain-containing protein.	FA complementation group F.	0.997
ENSCVAP00000017542	fancg	ENSCVAP00000017542	ENSCVAP00000026401	Fanconi_A_N domain-containing protein.	FA complementation group G.	0.999
ENSCVAP00000017542	fanci	ENSCVAP00000017542	ENSCVAP00000004484	Fanconi_A_N domain-containing protein.	FA complementation group I.	0.947
ENSCVAP00000017542	fancl	ENSCVAP00000017542	ENSCVAP00000014466	Fanconi_A_N domain-containing protein.	FA complementation group L.	0.997
ENSCVAP00000017542	fancm	ENSCVAP00000017542	ENSCVAP00000013080	Fanconi_A_N domain-containing protein.	Uncharacterized protein.	0.999
ENSCVAP00000017542	mus81	ENSCVAP00000017542	ENSCVAP00000015060	Fanconi_A_N domain-containing protein.	MUS81 structure-specific endonuclease subunit.	0.788
ENSCVAP00000017542	rpl10a	ENSCVAP00000017542	ENSCVAP00000004421	Fanconi_A_N domain-containing protein.	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.	0.945
ENSCVAP00000026260	ENSCVAP00000017542	ENSCVAP00000026260	ENSCVAP00000017542	FA complementation group C.	Fanconi_A_N domain-containing protein.	0.997
ENSCVAP00000026260	LOC107087406	ENSCVAP00000026260	ENSCVAP00000028572	FA complementation group C.	Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.	0.584