STRINGSTRING
clns1a clns1a gemin8 gemin8 sart3 sart3 Snrpf Snrpf LOC107098670 LOC107098670 strap strap snrpd3 snrpd3 gemin2 gemin2 gemin7 gemin7 prmt5 prmt5 gemin6 gemin6 LOC107083817 LOC107083817 prpf31 prpf31 SNRPD2 SNRPD2 lsm4 lsm4 gemin4 gemin4 SNRPN SNRPN ddx20 ddx20 prpf19 prpf19 snrpg snrpg snrpd1 snrpd1 prmt7 prmt7 prpf3 prpf3 ENSCVAP00000025291 ENSCVAP00000025291 Prpf8 Prpf8 prpf6 prpf6 snrpc snrpc LOC107081054 LOC107081054 lsm2 lsm2 ENSCVAP00000031045 ENSCVAP00000031045 snrpe snrpe gemin5 gemin5
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
clns1aChloride channel, nucleotide-sensitive, 1A. (251 aa)
gemin8Gem (nuclear organelle) associated protein 8. (203 aa)
sart3Spliceosome associated factor 3, U4/U6 recycling protein. (943 aa)
SnrpfSmall nuclear ribonucleoprotein polypeptide F. (126 aa)
LOC107098670U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (131 aa)
strapSerine/threonine kinase receptor associated protein. (277 aa)
snrpd3Small nuclear ribonucleoprotein Sm D3. (127 aa)
gemin2Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family. (253 aa)
gemin7Gem (nuclear organelle) associated protein 7. (126 aa)
prmt5Protein arginine N-methyltransferase 5; Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA); Belongs to the class I-like SAM-binding methyltransferase superfamily. (653 aa)
gemin6Gem (nuclear organelle) associated protein 6. (176 aa)
LOC107083817Survival of motor neuron 1, telomeric. (284 aa)
prpf31PRP31 pre-mRNA processing factor 31 homolog (yeast). (508 aa)
SNRPD2Small nuclear ribonucleoprotein Sm D2. (121 aa)
lsm4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (143 aa)
gemin4Gem (nuclear organelle) associated protein 4. (1031 aa)
SNRPNSmall nuclear ribonucleoprotein-associated protein. (241 aa)
ddx20DEAD (Asp-Glu-Ala-Asp) box polypeptide 20; Belongs to the DEAD box helicase family. (767 aa)
prpf19Pre-mRNA processing factor 19. (505 aa)
snrpgSmall nuclear ribonucleoprotein G. (76 aa)
snrpd1Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
prmt7Protein arginine N-methyltransferase; Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA), with a preference for the formation of MMA. Specifically mediates the symmetrical dimethylation of arginine residues in the small nuclear ribonucleoproteins Sm D1 (SNRPD1) and Sm D3 (SNRPD3); such methylation being required for the assembly and biogenesis of snRNP core particles. Specifically mediates the symmetric dimethylation of histone H4 'Arg-3' to form H4R3me2s. Plays a role in gene imprinting by being r [...] (685 aa)
prpf3PRP3 pre-mRNA processing factor 3 homolog (yeast). (695 aa)
ENSCVAP00000025291Uncharacterized protein. (465 aa)
Prpf8MPN domain-containing protein. (322 aa)
prpf6PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (969 aa)
snrpcU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (147 aa)
LOC107081054Small nuclear ribonucleoprotein Sm D2. (118 aa)
lsm2U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (106 aa)
ENSCVAP00000031045Uncharacterized protein. (115 aa)
snrpeSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
gemin5Gem (nuclear organelle) associated protein 5. (1463 aa)
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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