STRINGSTRING
LOC107100820 LOC107100820 prpf18 prpf18 xab2 xab2 yju2 yju2 LOC107103552 LOC107103552 snrnp200 snrnp200
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC107100820Src homology 2 domain containing transforming protein D, a. (437 aa)
prpf18PRP18 pre-mRNA processing factor 18 homolog (yeast). (350 aa)
xab2XPA binding protein 2. (849 aa)
yju2YJU2 splicing factor homolog. (338 aa)
LOC107103552ISY1 splicing factor homolog. (280 aa)
snrnp200Small nuclear ribonucleoprotein 200 (U5). (2056 aa)
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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