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sf3b1 sf3b1 luc7l3 luc7l3 dhx34 dhx34 bcas2 bcas2 txnl4a txnl4a snrpd3 snrpd3 prpf3 prpf3 cwc22 cwc22 ENSCVAP00000025291 ENSCVAP00000025291 sf3a3 sf3a3 sf3b3 sf3b3 prpf6 prpf6 tfip11 tfip11 prpf18 prpf18 htatsf1 htatsf1 snrpc snrpc LOC107081054 LOC107081054 casc3 casc3 crnkl1 crnkl1 lsm2 lsm2 ENSCVAP00000029121 ENSCVAP00000029121 SMU1 SMU1 snu13 snu13 snrpa1 snrpa1 ppie ppie syf2 syf2 ENSCVAP00000031045 ENSCVAP00000031045 snrpe snrpe sf3a2 sf3a2 rnf113a rnf113a ENSCVAP00000009384 ENSCVAP00000009384 rbm22 rbm22 lsm4 lsm4 SNRPD2 SNRPD2 ppil1 ppil1 SART1 SART1 prpf31 prpf31 cwc25 cwc25 LOC107100820 LOC107100820 snrnp40 snrnp40 dhx16 dhx16 dhx8 dhx8 sf3a1 sf3a1 prpf40a prpf40a mfap1 mfap1 DHX15 DHX15 smu1 smu1 LOC107102968 LOC107102968 prpf19 prpf19 snw1 snw1 LOC107090976 LOC107090976 ccdc130 ccdc130 prpf38a prpf38a eftud2 eftud2 xab2 xab2 plrg1 plrg1 snrpg snrpg yju2 yju2 SNRPN SNRPN LOC107103552 LOC107103552 cwc15 cwc15 Snrpf Snrpf prpf39 prpf39 snrnp200 snrnp200 cwc27 cwc27 snip1 snip1 lsm8 lsm8 rbm8a rbm8a snrpd1 snrpd1 lsm7 lsm7 wbp4 wbp4 LOC107098670 LOC107098670 Prpf4 Prpf4 luc7l luc7l LOC107091758 LOC107091758 u2af2 u2af2 lsm6 lsm6 bud13 bud13 sf3b2 sf3b2 zmat2 zmat2 lsm5 lsm5 sf3b6 sf3b6 sf3b5 sf3b5 sf3b4 sf3b4 phf5a phf5a eif4a3 eif4a3 lsm3 lsm3 cdc40 cdc40 ENSCVAP00000024197 ENSCVAP00000024197 aqr aqr
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
sf3b1Splicing factor 3b, subunit 1. (1268 aa)
luc7l3LUC7-like 3 pre-mRNA splicing factor. (481 aa)
dhx34DEAH (Asp-Glu-Ala-His) box polypeptide 34. (1148 aa)
bcas2BCAS2 pre-mRNA processing factor. (225 aa)
txnl4aThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
snrpd3Small nuclear ribonucleoprotein Sm D3. (127 aa)
prpf3PRP3 pre-mRNA processing factor 3 homolog (yeast). (695 aa)
cwc22CWC22 spliceosome associated protein homolog. (1010 aa)
ENSCVAP00000025291Uncharacterized protein. (465 aa)
sf3a3Splicing factor 3a, subunit 3. (494 aa)
sf3b3Splicing factor 3b, subunit 3. (1217 aa)
prpf6PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (969 aa)
tfip11Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family. (835 aa)
prpf18PRP18 pre-mRNA processing factor 18 homolog (yeast). (350 aa)
htatsf1HIV-1 Tat specific factor 1. (450 aa)
snrpcU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (147 aa)
LOC107081054Small nuclear ribonucleoprotein Sm D2. (118 aa)
casc3Casc3 exon junction complex subunit. (736 aa)
crnkl1Crooked neck pre-mRNA splicing factor 1. (743 aa)
lsm2U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (106 aa)
ENSCVAP00000029121WD_REPEATS_REGION domain-containing protein. (174 aa)
SMU1SMU1 DNA replication regulator and spliceosomal factor. (513 aa)
snu13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
snrpa1Small nuclear ribonucleoprotein polypeptide A. (250 aa)
ppiePeptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (301 aa)
syf2SYF2 pre-mRNA-splicing factor. (239 aa)
ENSCVAP00000031045Uncharacterized protein. (115 aa)
snrpeSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
sf3a2Splicing factor 3a, subunit 2. (294 aa)
rnf113aRing finger protein 113A. (321 aa)
ENSCVAP00000009384Coiled-coil domain containing 12. (134 aa)
rbm22RNA binding motif protein 22. (427 aa)
lsm4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (143 aa)
SNRPD2Small nuclear ribonucleoprotein Sm D2. (121 aa)
ppil1Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (166 aa)
SART1Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (771 aa)
prpf31PRP31 pre-mRNA processing factor 31 homolog (yeast). (508 aa)
cwc25CWC25 spliceosome associated protein homolog. (398 aa)
LOC107100820Src homology 2 domain containing transforming protein D, a. (437 aa)
snrnp40Small nuclear ribonucleoprotein 40 (U5). (347 aa)
dhx16DEAH (Asp-Glu-Ala-His) box polypeptide 16. (902 aa)
dhx8DEAH (Asp-Glu-Ala-His) box polypeptide 8. (1230 aa)
sf3a1Splicing factor 3a, subunit 1. (784 aa)
prpf40aPRP40 pre-mRNA processing factor 40 homolog A. (855 aa)
mfap1Microfibril associated protein 1. (408 aa)
DHX15DEAH-box helicase 15. (762 aa)
smu1SMU1 DNA replication regulator and spliceosomal factor b. (507 aa)
LOC107102968Zgc:158803. (417 aa)
prpf19Pre-mRNA processing factor 19. (505 aa)
snw1SNW domain containing 1. (498 aa)
LOC107090976Si:ch211-114c17.1. (739 aa)
ccdc130Coiled-coil domain containing 130. (399 aa)
prpf38aPre-mRNA processing factor 38A. (309 aa)
eftud2Elongation factor Tu GTP binding domain containing 2. (1003 aa)
xab2XPA binding protein 2. (849 aa)
plrg1Pleiotropic regulator 1. (512 aa)
snrpgSmall nuclear ribonucleoprotein G. (76 aa)
yju2YJU2 splicing factor homolog. (338 aa)
SNRPNSmall nuclear ribonucleoprotein-associated protein. (241 aa)
LOC107103552ISY1 splicing factor homolog. (280 aa)
cwc15CWC15 spliceosome associated protein homolog. (238 aa)
SnrpfSmall nuclear ribonucleoprotein polypeptide F. (126 aa)
prpf39PRP39 pre-mRNA processing factor 39 homolog (yeast). (763 aa)
snrnp200Small nuclear ribonucleoprotein 200 (U5). (2056 aa)
cwc27CWC27 spliceosome associated cyclophilin. (479 aa)
snip1Smad nuclear interacting protein. (363 aa)
lsm8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
rbm8aRNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (173 aa)
snrpd1Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
lsm7LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (108 aa)
wbp4Uncharacterized protein. (400 aa)
LOC107098670U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (131 aa)
Prpf4WD_REPEATS_REGION domain-containing protein. (123 aa)
luc7lLUC7-like (S. cerevisiae). (360 aa)
LOC107091758U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (466 aa)
u2af2U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (470 aa)
lsm6LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (80 aa)
bud13BUD13 homolog. (517 aa)
sf3b2Splicing factor 3b, subunit 2. (848 aa)
zmat2Zinc finger, matrin-type 2. (201 aa)
lsm5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
sf3b6Splicing factor 3b, subunit 6. (125 aa)
sf3b5Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
sf3b4Splicing factor 3b, subunit 4. (389 aa)
phf5aPHD finger protein 5A. (110 aa)
eif4a3Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (406 aa)
lsm3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
cdc40Cell division cycle 40 homolog (S. cerevisiae). (581 aa)
ENSCVAP00000024197Uncharacterized protein. (298 aa)
aqrAquarius intron-binding spliceosomal factor. (1469 aa)
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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