STRINGSTRING
ing4 ing4 LOC107082340 LOC107082340 chaf1a chaf1a mcm2 mcm2 LOC107098150 LOC107098150 SMARCAL1 SMARCAL1 poll poll rfc5 rfc5 DONSON DONSON rad51 rad51 mre11 mre11 wdr18 wdr18 mcm4 mcm4 Zpr1 Zpr1 exd2 exd2 NFIB NFIB LOC107094846 LOC107094846 polg2 polg2 recql5 recql5 rfc3 rfc3 cdc6 cdc6 LOC107098236 LOC107098236 tipin tipin rbbp4 rbbp4 pola2 pola2 dna2 dna2 cinp cinp ENSCVAP00000025174 ENSCVAP00000025174 topbp1 topbp1 LOC107089962 LOC107089962 recql4 recql4 grwd1 grwd1 lig4 lig4 rfc1 rfc1 wrnip1 wrnip1 pold1 pold1 cdt1 cdt1 ddx11 ddx11 pold2 pold2 NFIX NFIX mgme1 mgme1 Dtl Dtl primpol primpol fen1 fen1 zranb3 zranb3 Gen1 Gen1 LOC107087851 LOC107087851 pole3 pole3 LOC107096926 LOC107096926 orc4 orc4 rfc2 rfc2 Slx4 Slx4 ENSCVAP00000018664 ENSCVAP00000018664 rnaseh2a rnaseh2a pold4 pold4 gins4 gins4 rtel1 rtel1 pclaf pclaf prim2 prim2 tonsl tonsl gins2 gins2 rfc4 rfc4 ccne2 ccne2 gins3 gins3 polq polq dscc1 dscc1 rfwd3 rfwd3 rpa1 rpa1 mms22l mms22l noc3l noc3l pole4 pole4 atrx atrx rnaseh1 rnaseh1 ddx21 ddx21 polb polb cdc45 cdc45 ENSCVAP00000014877 ENSCVAP00000014877 LOC107099910 LOC107099910 rmi2 rmi2 zpr1 zpr1 chtf8 chtf8 prim1 prim1 ddx23 ddx23 orc2 orc2 fancm fancm LOC107099458 LOC107099458 ssbp1 ssbp1 supt16h supt16h eme1 eme1 recql recql pola1 pola1 ttc38 ttc38 ENSCVAP00000011358 ENSCVAP00000011358 NASP NASP LOC107088102 LOC107088102 LOC107089211 LOC107089211 nfia nfia orc1 orc1 ENSCVAP00000010146 ENSCVAP00000010146 rpain rpain pole pole cenpx cenpx polk polk lig1 lig1 chaf1b chaf1b LOC107084294 LOC107084294 LOC107092444 LOC107092444 LOC107087615 LOC107087615 ENSCVAP00000007749 ENSCVAP00000007749 ticrr ticrr ENSCVAP00000007189 ENSCVAP00000007189 ENSCVAP00000007153 ENSCVAP00000007153 twnk twnk sde2 sde2 ENSCVAP00000005733 ENSCVAP00000005733 ZNF830 ZNF830 rbm48 rbm48 fbh1 fbh1 rmi1 rmi1 wdhd1 wdhd1 polg polg mcmbp mcmbp RRM1 RRM1 lig3 lig3 gins1 gins1 pcna pcna mcm3 mcm3 pole2 pole2 gmnn gmnn LOC107091169 LOC107091169 mcm10 mcm10 tatdn1 tatdn1 ENSCVAP00000001347 ENSCVAP00000001347 mcm5 mcm5 timeless timeless mcm7 mcm7 ENSCVAP00000000721 ENSCVAP00000000721 EME2 EME2 rpa3 rpa3 traip traip LOC107100266 LOC107100266 atr atr orc5 orc5 sirt7 sirt7 mcm6 mcm6 kin kin ssrp1 ssrp1 orc3 orc3 thoc1 thoc1 RRM2 RRM2 LOC107082280 LOC107082280 RRM2-2 RRM2-2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ing4Inhibitor of growth protein. (249 aa)
LOC107082340SET domain and mariner transposase fusion gene. (283 aa)
chaf1aChromatin assembly factor 1, subunit A (p150). (727 aa)
mcm2DNA helicase; Belongs to the MCM family. (878 aa)
LOC107098150Nuclear factor 1; Recognizes and binds the palindromic sequence 5'- TTGGCNNNNNGCCAA-3' present in viral and cellular promoters and in the origin of replication of adenovirus type 2. These proteins are individually capable of activating transcription and replication. (540 aa)
SMARCAL1SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1; Belongs to the SNF2/RAD54 helicase family. SMARCAL1 subfamily. (884 aa)
pollPolymerase (DNA directed), lambda; Belongs to the DNA polymerase type-X family. (567 aa)
rfc5Replication factor C (activator 1) 5. (335 aa)
DONSONDownstream neighbor of SON. (533 aa)
rad51DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] (339 aa)
mre11Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (692 aa)
wdr18WD repeat domain 18. (424 aa)
mcm4DNA helicase; Belongs to the MCM family. (853 aa)
Zpr1ZPR1 zinc finger. (223 aa)
exd2Exonuclease 3'-5' domain containing 2. (671 aa)
NFIBNuclear factor 1; Recognizes and binds the palindromic sequence 5'- TTGGCNNNNNGCCAA-3' present in viral and cellular promoters and in the origin of replication of adenovirus type 2. These proteins are individually capable of activating transcription and replication. (560 aa)
LOC107094846HD domain-containing protein. (424 aa)
polg2Polymerase (DNA directed), gamma 2, accessory subunit. (380 aa)
recql5RecQ helicase-like 5. (1010 aa)
rfc3Replication factor C (activator 1) 3. (356 aa)
cdc6Cell division control protein; Involved in the initiation of DNA replication. Also participates in checkpoint controls that ensure DNA replication is completed before mitosis is initiated; Belongs to the CDC6/cdc18 family. (569 aa)
LOC107098236Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. (793 aa)
tipinTIMELESS-interacting protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family. (507 aa)
rbbp4Retinoblastoma binding protein 4. (424 aa)
pola2DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. (604 aa)
dna2DNA replication helicase/nuclease 2. (1358 aa)
cinpCyclin-dependent kinase 2 interacting protein. (209 aa)
ENSCVAP00000025174HD domain-containing protein. (393 aa)
topbp1DNA topoisomerase II binding protein 1. (1503 aa)
LOC107089962Zgc:110269. (342 aa)
recql4RecQ helicase-like 4. (942 aa)
grwd1Glutamate-rich WD repeat containing 1. (451 aa)
lig4DNA ligase. (908 aa)
rfc1Replication factor C subunit 1. (1159 aa)
wrnip1WRN helicase interacting protein 1. (576 aa)
pold1DNA polymerase. (1105 aa)
cdt1Chromatin licensing and DNA replication factor 1. (459 aa)
ddx11DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11. (854 aa)
pold2Polymerase (DNA directed), delta 2, regulatory subunit. (487 aa)
NFIXNuclear factor 1; Recognizes and binds the palindromic sequence 5'- TTGGCNNNNNGCCAA-3' present in viral and cellular promoters and in the origin of replication of adenovirus type 2. These proteins are individually capable of activating transcription and replication. (560 aa)
mgme1Mitochondrial genome maintenance exonuclease 1; Metal-dependent single-stranded DNA (ssDNA) exonuclease involved in mitochondrial genome maintenance. Has preference for 5'-3' exonuclease activity. Necessary for maintenance of proper 7S DNA levels. Probably involved in mitochondrial DNA (mtDNA) repair. Belongs to the MGME1 family. (350 aa)
DtlWD_REPEATS_REGION domain-containing protein. (142 aa)
primpolPrimase and polymerase (DNA-directed). (521 aa)
fen1Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (380 aa)
zranb3Zinc finger, RAN-binding domain containing 3. (703 aa)
Gen1Chromo_2 domain-containing protein. (523 aa)
LOC107087851Ribonucleotide reductase M2 b. (348 aa)
pole3Polymerase (DNA directed), epsilon 3 (p17 subunit). (146 aa)
LOC107096926Uncharacterized protein. (558 aa)
orc4Origin recognition complex subunit 4; Component of the origin recognition complex (ORC) that binds origins of replication; Belongs to the ORC4 family. (447 aa)
rfc2Replication factor C (activator 1) 2. (373 aa)
Slx4BTB domain-containing protein. (1002 aa)
ENSCVAP00000018664Uncharacterized protein. (129 aa)
rnaseh2aRibonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. (283 aa)
pold4Si:dkey-28b4.7. (107 aa)
gins4DNA replication complex GINS protein SLD5; The GINS complex plays an essential role in the initiation of DNA replication; Belongs to the GINS4/SLD5 family. (224 aa)
rtel1Regulator of telomere elongation helicase 1; ATP-dependent DNA helicase implicated in telomere-length regulation, DNA repair and the maintenance of genomic stability. Acts as an anti-recombinase to counteract toxic recombination and limit crossover during meiosis. Regulates meiotic recombination and crossover homeostasis by physically dissociating strand invasion events and thereby promotes noncrossover repair by meiotic synthesis dependent strand annealing (SDSA) as well as disassembly of D loop recombination intermediates. Also disassembles T loops and prevents telomere fragility by [...] (1170 aa)
pclafPCNA clamp associated factor. (116 aa)
prim2DNA primase large subunit; Regulatory subunit of the DNA primase complex and component of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which play an essential role in the initiation of DNA synthesis. The primase subunit of the polymerase alpha complex initiates DNA synthesis by oligomerising short RNA primers on both leading and lagging strands. (505 aa)
tonslTonsoku-like, DNA repair protein. (1433 aa)
gins2DNA replication complex GINS protein PSF2; Belongs to the GINS2/PSF2 family. (186 aa)
rfc4Replication factor C (activator 1) 4. (357 aa)
ccne2Cyclin E2; Belongs to the cyclin family. (345 aa)
gins3GINS complex subunit 3. (211 aa)
polqPolymerase (DNA directed), theta. (2106 aa)
dscc1DNA replication and sister chromatid cohesion 1. (390 aa)
rfwd3Ring finger and WD repeat domain 3. (529 aa)
rpa1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (606 aa)
mms22lMMS22-like, DNA repair protein. (1230 aa)
noc3lNucleolar complex protein 3 homolog. (671 aa)
pole4Polymerase (DNA-directed), epsilon 4, accessory subunit. (129 aa)
atrxATRX chromatin remodeler. (1892 aa)
rnaseh1Ribonuclease H1; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (302 aa)
ddx21DEAD (Asp-Glu-Ala-Asp) box helicase 21. (753 aa)
polbDNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. (339 aa)
cdc45CDC45 cell division cycle 45 homolog (S. cerevisiae). (566 aa)
ENSCVAP00000014877Uncharacterized protein. (278 aa)
LOC107099910BLM RecQ like helicase. (1091 aa)
rmi2RecQ mediated genome instability 2. (146 aa)
zpr1ZPR1 zinc finger. (170 aa)
chtf8CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae). (131 aa)
prim1DNA primase; Belongs to the eukaryotic-type primase small subunit family. (425 aa)
ddx23DEAD (Asp-Glu-Ala-Asp) box polypeptide 23. (802 aa)
orc2Origin recognition complex, subunit 2. (536 aa)
fancmUncharacterized protein. (1764 aa)
LOC107099458Inhibitor of growth family, member 5a. (140 aa)
ssbp1Single-stranded DNA binding protein 1. (147 aa)
supt16hSPT16 homolog, facilitates chromatin remodeling subunit. (1029 aa)
eme1Essential meiotic structure-specific endonuclease 1. (522 aa)
recqlATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (633 aa)
pola1DNA polymerase. (1420 aa)
ttc38Tetratricopeptide repeat domain 38. (469 aa)
ENSCVAP00000011358Uncharacterized protein. (544 aa)
NASPNuclear autoantigenic sperm protein. (427 aa)
LOC107088102Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (670 aa)
LOC107089211Nuclear autoantigenic sperm protein (histone-binding). (420 aa)
nfiaNuclear factor 1; Recognizes and binds the palindromic sequence 5'- TTGGCNNNNNGCCAA-3' present in viral and cellular promoters and in the origin of replication of adenovirus type 2. These proteins are individually capable of activating transcription and replication. (525 aa)
orc1Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. (854 aa)
ENSCVAP00000010146Tower domain-containing protein. (2271 aa)
rpainRPA interacting protein. (227 aa)
poleDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2017 aa)
cenpxCentromere protein X. (114 aa)
polkPolymerase (DNA directed) kappa. (905 aa)
lig1DNA ligase. (1004 aa)
chaf1bChromatin assembly factor 1, subunit B. (656 aa)
LOC107084294DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...] (588 aa)
LOC107092444Polymerase (DNA-directed), delta 3, accessory subunit. (439 aa)
LOC107087615DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...] (730 aa)
ENSCVAP00000007749CTF/NF-I domain-containing protein. (178 aa)
ticrrUncharacterized protein. (1700 aa)
ENSCVAP00000007189HD domain-containing protein. (161 aa)
ENSCVAP00000007153HD domain-containing protein. (144 aa)
twnkTwinkle mtDNA helicase. (726 aa)
sde2SDE2 telomere maintenance homolog (S. pombe). (406 aa)
ENSCVAP00000005733Uncharacterized protein. (144 aa)
ZNF830Zinc finger protein 830. (336 aa)
rbm48RNA binding motif protein 48. (362 aa)
fbh1F-box DNA helicase 1. (882 aa)
rmi1RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae). (643 aa)
wdhd1WD repeat and HMG-box DNA binding protein 1. (1064 aa)
polgPolymerase (DNA directed), gamma. (1193 aa)
mcmbpMinichromosome maintenance complex binding protein. (630 aa)
RRM1Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. (795 aa)
lig3Ligase III, DNA, ATP-dependent. (819 aa)
gins1GINS complex subunit 1 (Psf1 homolog). (189 aa)
pcnaProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
mcm3DNA helicase; Belongs to the MCM family. (814 aa)
pole2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (529 aa)
gmnnGeminin DNA replication inhibitor. (216 aa)
LOC107091169ATPase family AAA domain containing 5a. (1526 aa)
mcm10Minichromosome maintenance 10 replication initiation factor. (851 aa)
tatdn1TatD DNase domain containing 1. (312 aa)
ENSCVAP00000001347SCY domain-containing protein. (126 aa)
mcm5DNA helicase; Belongs to the MCM family. (738 aa)
timelessTimeless circadian clock. (1251 aa)
mcm7DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...] (727 aa)
ENSCVAP00000000721Uncharacterized protein. (212 aa)
EME2ERCC4 domain-containing protein. (448 aa)
rpa3Replication protein A3. (122 aa)
traipTRAF-interacting protein. (448 aa)
LOC107100266DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...] (752 aa)
atrATR serine/threonine kinase; Belongs to the PI3/PI4-kinase family. (2502 aa)
orc5Origin recognition complex, subunit 5. (442 aa)
sirt7Sirtuin 7. (409 aa)
mcm6DNA helicase; Belongs to the MCM family. (824 aa)
kinKin17 DNA and RNA binding protein. (390 aa)
ssrp1FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (707 aa)
orc3Origin recognition complex, subunit 3. (679 aa)
thoc1THO complex 1. (654 aa)
RRM2Ribonucleotide reductase regulatory subunit M2. (388 aa)
LOC107082280Uncharacterized protein. (599 aa)
RRM2-2Ribonucleotide reductase regulatory subunit M2. (389 aa)
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
Server load: low (32%) [HD]