(47 nodes) Acidic amino acid transport network (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107086645	Aa_trans domain-containing protein. (523 aa)
	gipc1	GIPC PDZ domain containing family, member 1. (335 aa)
	LOC107089517	MFS domain-containing protein. (418 aa)
	SLC25A12	Solute carrier family 25 member 12; Belongs to the mitochondrial carrier (TC 2.A.29) family. (640 aa)
	LOC107093007	Amino acid transporter. (556 aa)
	slc1a5	Amino acid transporter. (531 aa)
	slc1a4	Solute carrier family 1 member 4. (545 aa)
	LOC107085821	Si:ch73-352p4.8. (484 aa)
	SLC17A6	Solute carrier family 17 member 6b. (580 aa)
	slc1a7	Amino acid transporter. (577 aa)
	LOC107101314	Solute carrier family 25 member 55a; Belongs to the mitochondrial carrier (TC 2.A.29) family. (332 aa)
	LOC107087035	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (339 aa)
	epm2a	EPM2A glucan phosphatase, laforin. (320 aa)
	nf1	Neurofibromin 1b. (2729 aa)
	slc17a8	Solute carrier family 17 member 8. (582 aa)
	ENSCVAP00000022536	Amino acid transporter. (141 aa)
	Slc17a6	Solute carrier family 17 member 6. (278 aa)
	slc25a18	Solute carrier family 25 member 18; Belongs to the mitochondrial carrier (TC 2.A.29) family. (328 aa)
	LOC107094054	Amino acid transporter. (538 aa)
	ccdc77	Coiled-coil domain containing 77. (497 aa)
	LOC107097311	Amino acid transporter. (562 aa)
	slc38a7	Solute carrier family 38 member 7. (456 aa)
	LOC107091873	Solute carrier family 25 member 12; Belongs to the mitochondrial carrier (TC 2.A.29) family. (683 aa)
	LOC107082336	PRA1 family protein. (190 aa)
	LOC107082412	Leucine rich repeat containing 8 VRAC subunit Db. (851 aa)
	lrrc8c	Leucine rich repeat containing 8 VRAC subunit C. (796 aa)
	LOC107080668	Amino acid transporter. (520 aa)
	ENSCVAP00000013402	Uncharacterized protein. (128 aa)
	LOC107096803	Amino acid transporter. (707 aa)
	slc1a1	Amino acid transporter. (439 aa)
	gipc2	GIPC PDZ domain containing family, member 2. (329 aa)
	gipc3	GIPC PDZ domain containing family, member 3. (331 aa)
	slc3a1	Solute carrier family 3 member 1. (684 aa)
	slc7a11	Solute carrier family 7 member 11. (483 aa)
	LOC107104407	Leucine rich repeat containing 8 VRAC subunit Da. (847 aa)
	cln8	CLN8 transmembrane ER and ERGIC protein. (288 aa)
	LOC107103489	Solute carrier family 32 member 1. (526 aa)
	slc1a2	Amino acid transporter. (537 aa)
	LOC107100183	Amino acid transporter. (533 aa)
	Lrrc8e	Uncharacterized protein. (235 aa)
	slc1a3	Amino acid transporter. (526 aa)
	LOC107084457	Amino acid transporter. (541 aa)
	LOC107095133	Solute carrier family 17 member 7b. (584 aa)
	ENSCVAP00000003642	Solute carrier family 17 member 6. (203 aa)
	LOC107096159	Solute carrier family 25 member 22a; Belongs to the mitochondrial carrier (TC 2.A.29) family. (312 aa)
	arl6ip5	PRA1 family protein. (191 aa)
	ENSCVAP00000001661	Aa_trans domain-containing protein. (447 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000003642	Slc17a6	ENSCVAP00000003642	ENSCVAP00000022258	Solute carrier family 17 member 6.	Solute carrier family 17 member 6.	0.543
LOC107082336	slc1a1	ENSCVAP00000016785	ENSCVAP00000013007	PRA1 family protein.	Amino acid transporter.	0.505
LOC107082412	lrrc8c	ENSCVAP00000015238	ENSCVAP00000015235	Leucine rich repeat containing 8 VRAC subunit Db.	Leucine rich repeat containing 8 VRAC subunit C.	0.517
LOC107085821	slc3a1	ENSCVAP00000029155	ENSCVAP00000010735	Si:ch73-352p4.8.	Solute carrier family 3 member 1.	0.701
LOC107086645	LOC107094054	ENSCVAP00000000967	ENSCVAP00000021925	Aa_trans domain-containing protein.	Amino acid transporter.	0.424
LOC107086645	slc1a2	ENSCVAP00000000967	ENSCVAP00000006940	Aa_trans domain-containing protein.	Amino acid transporter.	0.424
LOC107094054	LOC107086645	ENSCVAP00000021925	ENSCVAP00000000967	Amino acid transporter.	Aa_trans domain-containing protein.	0.424
LOC107094054	LOC107103489	ENSCVAP00000021925	ENSCVAP00000007262	Amino acid transporter.	Solute carrier family 32 member 1.	0.424
LOC107103489	LOC107094054	ENSCVAP00000007262	ENSCVAP00000021925	Solute carrier family 32 member 1.	Amino acid transporter.	0.424
LOC107103489	slc1a2	ENSCVAP00000007262	ENSCVAP00000006940	Solute carrier family 32 member 1.	Amino acid transporter.	0.685
LOC107104407	lrrc8c	ENSCVAP00000008262	ENSCVAP00000015235	Leucine rich repeat containing 8 VRAC subunit Da.	Leucine rich repeat containing 8 VRAC subunit C.	0.518
Lrrc8e	lrrc8c	ENSCVAP00000006004	ENSCVAP00000015235	Uncharacterized protein.	Leucine rich repeat containing 8 VRAC subunit C.	0.530
Slc17a6	ENSCVAP00000003642	ENSCVAP00000022258	ENSCVAP00000003642	Solute carrier family 17 member 6.	Solute carrier family 17 member 6.	0.543
arl6ip5	slc1a1	ENSCVAP00000002808	ENSCVAP00000013007	PRA1 family protein.	Amino acid transporter.	0.505
lrrc8c	LOC107082412	ENSCVAP00000015235	ENSCVAP00000015238	Leucine rich repeat containing 8 VRAC subunit C.	Leucine rich repeat containing 8 VRAC subunit Db.	0.517
lrrc8c	LOC107104407	ENSCVAP00000015235	ENSCVAP00000008262	Leucine rich repeat containing 8 VRAC subunit C.	Leucine rich repeat containing 8 VRAC subunit Da.	0.518
lrrc8c	Lrrc8e	ENSCVAP00000015235	ENSCVAP00000006004	Leucine rich repeat containing 8 VRAC subunit C.	Uncharacterized protein.	0.530
slc1a1	LOC107082336	ENSCVAP00000013007	ENSCVAP00000016785	Amino acid transporter.	PRA1 family protein.	0.505
slc1a1	arl6ip5	ENSCVAP00000013007	ENSCVAP00000002808	Amino acid transporter.	PRA1 family protein.	0.505
slc1a1	slc3a1	ENSCVAP00000013007	ENSCVAP00000010735	Amino acid transporter.	Solute carrier family 3 member 1.	0.670