(9 nodes) Proteasome core complex, alpha-subunit complex network (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	psma6	Proteasome subunit alpha type. (246 aa)
	psma1	Proteasome endopeptidase complex. (238 aa)
	psma5	Proteasome subunit alpha type. (241 aa)
	psma4	Proteasome subunit alpha type. (261 aa)
	psma8	Proteasome subunit alpha type. (251 aa)
	LOC107095481	Proteasome subunit alpha type. (246 aa)
	psma3	Proteasome subunit alpha type. (255 aa)
	LOC107094495	Proteasome subunit alpha type. (246 aa)
	psma2	Proteasome subunit alpha type. (234 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107094495	LOC107095481	ENSCVAP00000004706	ENSCVAP00000009711	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.901
LOC107094495	psma1	ENSCVAP00000004706	ENSCVAP00000028315	Proteasome subunit alpha type.	Proteasome endopeptidase complex.	0.989
LOC107094495	psma2	ENSCVAP00000004706	ENSCVAP00000002620	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.988
LOC107094495	psma3	ENSCVAP00000004706	ENSCVAP00000006328	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.990
LOC107094495	psma4	ENSCVAP00000004706	ENSCVAP00000022265	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.987
LOC107094495	psma5	ENSCVAP00000004706	ENSCVAP00000022960	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.990
LOC107094495	psma6	ENSCVAP00000004706	ENSCVAP00000001865	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.901
LOC107094495	psma8	ENSCVAP00000004706	ENSCVAP00000019259	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.981
LOC107095481	LOC107094495	ENSCVAP00000009711	ENSCVAP00000004706	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.901
LOC107095481	psma1	ENSCVAP00000009711	ENSCVAP00000028315	Proteasome subunit alpha type.	Proteasome endopeptidase complex.	0.989
LOC107095481	psma2	ENSCVAP00000009711	ENSCVAP00000002620	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.988
LOC107095481	psma3	ENSCVAP00000009711	ENSCVAP00000006328	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.990
LOC107095481	psma4	ENSCVAP00000009711	ENSCVAP00000022265	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.987
LOC107095481	psma5	ENSCVAP00000009711	ENSCVAP00000022960	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.990
LOC107095481	psma6	ENSCVAP00000009711	ENSCVAP00000001865	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.900
LOC107095481	psma8	ENSCVAP00000009711	ENSCVAP00000019259	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.981
psma1	LOC107094495	ENSCVAP00000028315	ENSCVAP00000004706	Proteasome endopeptidase complex.	Proteasome subunit alpha type.	0.989
psma1	LOC107095481	ENSCVAP00000028315	ENSCVAP00000009711	Proteasome endopeptidase complex.	Proteasome subunit alpha type.	0.989
psma1	psma2	ENSCVAP00000028315	ENSCVAP00000002620	Proteasome endopeptidase complex.	Proteasome subunit alpha type.	0.999
psma1	psma3	ENSCVAP00000028315	ENSCVAP00000006328	Proteasome endopeptidase complex.	Proteasome subunit alpha type.	0.999