STRINGSTRING
ugcg ugcg LOC107095270 LOC107095270 lats1 lats1 ift74 ift74 scel scel LOC107088569 LOC107088569 LOC107095256 LOC107095256 sharpin sharpin LOC107089352 LOC107089352 ENSCVAP00000024543 ENSCVAP00000024543 wnt16 wnt16 txnip txnip kdf1 kdf1 LOC107088477 LOC107088477 LOC107088571 LOC107088571 LOC107088570 LOC107088570 LOC107101110 LOC107101110 lats2 lats2 foxn1 foxn1 asah1 asah1 tsg101 tsg101 med1 med1 cnfn cnfn sav1 sav1 KAZN KAZN opn3 opn3 fosl2 fosl2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ugcgUDP-glucose ceramide glucosyltransferase. (394 aa)
LOC107095270Arrestin_C domain-containing protein. (395 aa)
lats1Large tumor suppressor kinase 1. (1079 aa)
ift74Intraflagellar transport 74. (519 aa)
scelLIM zinc-binding domain-containing protein. (506 aa)
LOC107088569Keratin 5; Belongs to the intermediate filament family. (535 aa)
LOC107095256Uncharacterized protein. (404 aa)
sharpinSHANK-associated RH domain interacting protein. (435 aa)
LOC107089352Kazrin, periplakin interacting protein b. (472 aa)
ENSCVAP00000024543Zgc:123278. (186 aa)
wnt16Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (357 aa)
txnipThioredoxin interacting protein. (405 aa)
kdf1Keratinocyte differentiation factor 1a. (364 aa)
LOC107088477Keratin 4; Belongs to the intermediate filament family. (466 aa)
LOC107088571Keratin 8; Belongs to the intermediate filament family. (449 aa)
LOC107088570Keratin 8; Belongs to the intermediate filament family. (521 aa)
LOC107101110Uncharacterized protein. (433 aa)
lats2Large tumor suppressor kinase 2. (1158 aa)
foxn1Forkhead box N1. (563 aa)
asah1N-acylsphingosine amidohydrolase (acid ceramidase) 1a; Belongs to the acid ceramidase family. (334 aa)
tsg101Tumor susceptibility 101a. (390 aa)
med1Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (1786 aa)
cnfnCornifelin. (116 aa)
sav1Salvador family WW domain containing protein 1. (379 aa)
KAZNKazrin, periplakin interacting protein a. (892 aa)
opn3Opsin 3. (415 aa)
fosl2Fos-like antigen 2. (349 aa)
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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