25 items (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSCVAP00000007651	Uncharacterized protein. (65 aa)
	LOC107092921	Uncharacterized protein. (1946 aa)
	camsap1	Calmodulin regulated spectrin-associated protein 1b. (1541 aa)
	ENSCVAP00000016891	ANK_REP_REGION domain-containing protein. (480 aa)
	LOC107088985	Uncharacterized protein. (1541 aa)
	LOC107087278	Ankyrin 1, erythrocytic a. (1224 aa)
	slc26a5	Solute carrier family 26 member 5. (740 aa)
	LOC107092319	Calmodulin regulated spectrin-associated protein family, member 2b. (1477 aa)
	dctn2	Dynactin 2 (p50). (373 aa)
	LOC107103687	Ankyrin 1, erythrocytic a. (173 aa)
	ENSCVAP00000027138	ANK_REP_REGION domain-containing protein. (385 aa)
	ENSCVAP00000027162	Death domain-containing protein. (160 aa)
	PTPRC	Protein tyrosine phosphatase receptor type C. (966 aa)
	ush1c	Usher syndrome 1C. (861 aa)
	ENSCVAP00000016828	Uncharacterized protein. (914 aa)
	anks4b	Ankyrin repeat and sterile alpha motif domain containing 4B. (432 aa)
	LOC107090238	Usher syndrome 1Gb (autosomal recessive). (480 aa)
	Ank3	Death domain-containing protein. (117 aa)
	CAMSAP1	Calmodulin regulated spectrin associated protein 1. (1064 aa)
	ENSCVAP00000011049	Uncharacterized protein. (78 aa)
	Camsap2	CKK domain-containing protein. (184 aa)
	ENSCVAP00000010686	Uncharacterized protein. (92 aa)
	camsap3	Calmodulin regulated spectrin-associated protein family, member 3. (1406 aa)
	LOC107083163	Usher syndrome 1Ga (autosomal recessive). (469 aa)
	LOC107103653	Ankyrin repeat and death domain containing 1B. (319 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ank3	ENSCVAP00000016891	ENSCVAP00000013193	ENSCVAP00000016891	Death domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.866
Ank3	ENSCVAP00000027138	ENSCVAP00000013193	ENSCVAP00000027138	Death domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.865
Ank3	LOC107087278	ENSCVAP00000013193	ENSCVAP00000019155	Death domain-containing protein.	Ankyrin 1, erythrocytic a.	0.869
ENSCVAP00000016828	ENSCVAP00000016891	ENSCVAP00000016828	ENSCVAP00000016891	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.590
ENSCVAP00000016828	ENSCVAP00000027138	ENSCVAP00000016828	ENSCVAP00000027138	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.768
ENSCVAP00000016891	Ank3	ENSCVAP00000016891	ENSCVAP00000013193	ANK_REP_REGION domain-containing protein.	Death domain-containing protein.	0.866
ENSCVAP00000016891	ENSCVAP00000016828	ENSCVAP00000016891	ENSCVAP00000016828	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.590
ENSCVAP00000016891	ENSCVAP00000027162	ENSCVAP00000016891	ENSCVAP00000027162	ANK_REP_REGION domain-containing protein.	Death domain-containing protein.	0.589
ENSCVAP00000027138	Ank3	ENSCVAP00000027138	ENSCVAP00000013193	ANK_REP_REGION domain-containing protein.	Death domain-containing protein.	0.865
ENSCVAP00000027138	ENSCVAP00000016828	ENSCVAP00000027138	ENSCVAP00000016828	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.768
ENSCVAP00000027138	ENSCVAP00000027162	ENSCVAP00000027138	ENSCVAP00000027162	ANK_REP_REGION domain-containing protein.	Death domain-containing protein.	0.622
ENSCVAP00000027162	ENSCVAP00000016891	ENSCVAP00000027162	ENSCVAP00000016891	Death domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.589
ENSCVAP00000027162	ENSCVAP00000027138	ENSCVAP00000027162	ENSCVAP00000027138	Death domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.622
ENSCVAP00000027162	LOC107087278	ENSCVAP00000027162	ENSCVAP00000019155	Death domain-containing protein.	Ankyrin 1, erythrocytic a.	0.766
LOC107083163	ush1c	ENSCVAP00000009998	ENSCVAP00000002036	Usher syndrome 1Ga (autosomal recessive).	Usher syndrome 1C.	0.890
LOC107087278	Ank3	ENSCVAP00000019155	ENSCVAP00000013193	Ankyrin 1, erythrocytic a.	Death domain-containing protein.	0.869
LOC107087278	ENSCVAP00000027162	ENSCVAP00000019155	ENSCVAP00000027162	Ankyrin 1, erythrocytic a.	Death domain-containing protein.	0.766
LOC107090238	ush1c	ENSCVAP00000013710	ENSCVAP00000002036	Usher syndrome 1Gb (autosomal recessive).	Usher syndrome 1C.	0.872
anks4b	ush1c	ENSCVAP00000016120	ENSCVAP00000002036	Ankyrin repeat and sterile alpha motif domain containing 4B.	Usher syndrome 1C.	0.872
ush1c	LOC107083163	ENSCVAP00000002036	ENSCVAP00000009998	Usher syndrome 1C.	Usher syndrome 1Ga (autosomal recessive).	0.890