72 items (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSCVAP00000006056	Uncharacterized protein. (453 aa)
	ENSCVAP00000006043	Uncharacterized protein. (86 aa)
	ENSCVAP00000006030	Uncharacterized protein. (403 aa)
	sptbn1	Spectrin beta, non-erythrocytic 1. (1991 aa)
	ENSCVAP00000005849	Si:zfos-1837d3.1. (196 aa)
	ENSCVAP00000005751	RabBD domain-containing protein. (119 aa)
	anln	Anillin, actin binding protein. (1064 aa)
	LOC107103769	PDZ domain-containing protein. (864 aa)
	LOC107100882	Uncharacterized protein. (293 aa)
	LOC107091747	Neurofibromin 2b (merlin). (591 aa)
	LOC107090570	Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family. (215 aa)
	LOC107087815	PH domain-containing protein. (2249 aa)
	ENSCVAP00000001689	Uncharacterized protein. (284 aa)
	LOC107091163	Zgc:77748. (284 aa)
	LOC107091162	Uncharacterized protein. (284 aa)
	SHROOM2	Shroom family member 2. (1547 aa)
	LOC107102280	Protein phosphatase 1 regulatory subunit 9A-like A. (1403 aa)
	sptbn4	PH domain-containing protein. (1399 aa)
	ENSCVAP00000027661	Uncharacterized protein. (542 aa)
	ENSCVAP00000027121	Calponin-homology (CH) domain-containing protein. (230 aa)
	ENSCVAP00000027104	PH domain-containing protein. (128 aa)
	shroom4	ASD2 domain-containing protein. (1637 aa)
	LOC107089847	Spectrin beta chain; Belongs to the spectrin family. (2197 aa)
	LOC107084306	Coactosin-like protein. (142 aa)
	LOC107103642	Uncharacterized protein. (1422 aa)
	LOC107099047	RabBD domain-containing protein. (159 aa)
	WDR1	WD repeat domain 1. (605 aa)
	LOC107092264	Myosin VIIA and Rab interacting protein. (795 aa)
	LOC107104858	Shroom family member 1. (1506 aa)
	nf2	Neurofibromin 2a (merlin). (591 aa)
	LOC107100883	MARVEL domain-containing protein. (296 aa)
	LOC107100889	Si:dkeyp-66d1.7. (294 aa)
	LOC107096142	Uncharacterized protein. (482 aa)
	ENSCVAP00000022212	Uncharacterized protein. (250 aa)
	ENSCVAP00000022207	Uncharacterized protein. (81 aa)
	LLGL1	LLGL scribble cell polarity complex component 1. (1064 aa)
	flot1	Flotillin; Belongs to the band 7/mec-2 family. Flotillin subfamily. (427 aa)
	ENSCVAP00000021860	Uncharacterized protein. (80 aa)
	llgl2	LLGL scribble cell polarity complex component 2. (881 aa)
	LOC107085000	Uncharacterized protein. (277 aa)
	kncn	Kinocilin. (130 aa)
	LOC107086736	Flotillin; Belongs to the band 7/mec-2 family. Flotillin subfamily. (423 aa)
	vcl	Vinculin b. (1066 aa)
	LOC107084551	Uncharacterized protein. (807 aa)
	dbnl	Drebrin-like b. (477 aa)
	actn1	Actinin, alpha 1. (890 aa)
	LOC107081031	Melanophilin a. (567 aa)
	LOC107102380	Protein phosphatase 1, regulatory subunit 9Bb. (796 aa)
	ENSCVAP00000010979	Uncharacterized protein. (533 aa)
	actn3	Actinin alpha 3b. (897 aa)
	pjvk	Pejvakin. (356 aa)
	LOC107093747	Spectrin beta chain; Belongs to the spectrin family. (2149 aa)
	LOC107101748	Uncharacterized protein. (281 aa)
	ppp1r9a	Protein phosphatase 1, regulatory subunit 9A. (1111 aa)
	LOC107084685	Actinin, alpha 2b. (894 aa)
	LOC107099369	Si:dkey-30c15.10. (924 aa)
	cldn5	Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family. (215 aa)
	LOC107091389	PH domain-containing protein. (1514 aa)
	LOC107084591	Vinculin a. (1066 aa)
	ACTN4	Actinin alpha 4. (898 aa)
	golgb1	Golgin B1. (2802 aa)
	LOC107095911	Hematopoietic cell-specific Lyn substrate 1. (514 aa)
	dbn1	Drebrin 1. (507 aa)
	LOC107101058	Uncharacterized protein. (282 aa)
	plekhh2	Pleckstrin homology domain containing, family H (with MyTH4 domain) member 2. (1452 aa)
	LOC107091876	Uncharacterized protein. (1290 aa)
	cttn	Cortactin. (472 aa)
	ENSCVAP00000018010	MARVEL domain-containing protein. (173 aa)
	LOC107089601	Coactosin-like F-actin binding protein 1. (142 aa)
	LOC107103127	Uncharacterized protein. (492 aa)
	LOC107095581	Shroom family member 3. (1928 aa)
	Sptan1	Uncharacterized protein. (178 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACTN4	ENSCVAP00000006056	ENSCVAP00000016966	ENSCVAP00000006056	Actinin alpha 4.	Uncharacterized protein.	0.725
ACTN4	ENSCVAP00000021860	ENSCVAP00000016966	ENSCVAP00000021860	Actinin alpha 4.	Uncharacterized protein.	0.614
ACTN4	LOC107084591	ENSCVAP00000016966	ENSCVAP00000015994	Actinin alpha 4.	Vinculin a.	0.959
ACTN4	actn1	ENSCVAP00000016966	ENSCVAP00000029159	Actinin alpha 4.	Actinin, alpha 1.	0.900
ACTN4	vcl	ENSCVAP00000016966	ENSCVAP00000032288	Actinin alpha 4.	Vinculin b.	0.959
ENSCVAP00000005751	LOC107092264	ENSCVAP00000005751	ENSCVAP00000023684	RabBD domain-containing protein.	Myosin VIIA and Rab interacting protein.	0.803
ENSCVAP00000005849	ENSCVAP00000006030	ENSCVAP00000005849	ENSCVAP00000006030	Si:zfos-1837d3.1.	Uncharacterized protein.	0.706
ENSCVAP00000005849	ENSCVAP00000006043	ENSCVAP00000005849	ENSCVAP00000006043	Si:zfos-1837d3.1.	Uncharacterized protein.	0.646
ENSCVAP00000005849	ENSCVAP00000006056	ENSCVAP00000005849	ENSCVAP00000006056	Si:zfos-1837d3.1.	Uncharacterized protein.	0.742
ENSCVAP00000005849	ENSCVAP00000010979	ENSCVAP00000005849	ENSCVAP00000010979	Si:zfos-1837d3.1.	Uncharacterized protein.	0.929
ENSCVAP00000005849	ENSCVAP00000022212	ENSCVAP00000005849	ENSCVAP00000022212	Si:zfos-1837d3.1.	Uncharacterized protein.	0.562
ENSCVAP00000005849	ENSCVAP00000027121	ENSCVAP00000005849	ENSCVAP00000027121	Si:zfos-1837d3.1.	Calponin-homology (CH) domain-containing protein.	0.522
ENSCVAP00000005849	ENSCVAP00000027661	ENSCVAP00000005849	ENSCVAP00000027661	Si:zfos-1837d3.1.	Uncharacterized protein.	0.677
ENSCVAP00000005849	Sptan1	ENSCVAP00000005849	ENSCVAP00000006080	Si:zfos-1837d3.1.	Uncharacterized protein.	0.706
ENSCVAP00000005849	sptbn1	ENSCVAP00000005849	ENSCVAP00000005905	Si:zfos-1837d3.1.	Spectrin beta, non-erythrocytic 1.	0.897
ENSCVAP00000006030	ENSCVAP00000005849	ENSCVAP00000006030	ENSCVAP00000005849	Uncharacterized protein.	Si:zfos-1837d3.1.	0.706
ENSCVAP00000006030	ENSCVAP00000006056	ENSCVAP00000006030	ENSCVAP00000006056	Uncharacterized protein.	Uncharacterized protein.	0.934
ENSCVAP00000006030	ENSCVAP00000010979	ENSCVAP00000006030	ENSCVAP00000010979	Uncharacterized protein.	Uncharacterized protein.	0.963
ENSCVAP00000006030	ENSCVAP00000022207	ENSCVAP00000006030	ENSCVAP00000022207	Uncharacterized protein.	Uncharacterized protein.	0.706
ENSCVAP00000006030	ENSCVAP00000022212	ENSCVAP00000006030	ENSCVAP00000022212	Uncharacterized protein.	Uncharacterized protein.	0.736