9 items (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	gemin5	Gem (nuclear organelle) associated protein 5. (1463 aa)
	gemin8	Gem (nuclear organelle) associated protein 8. (203 aa)
	strap	Serine/threonine kinase receptor associated protein. (277 aa)
	LOC107083817	Survival of motor neuron 1, telomeric. (284 aa)
	ddx20	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20; Belongs to the DEAD box helicase family. (767 aa)
	gemin4	Gem (nuclear organelle) associated protein 4. (1031 aa)
	gemin7	Gem (nuclear organelle) associated protein 7. (126 aa)
	gemin6	Gem (nuclear organelle) associated protein 6. (176 aa)
	gemin2	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family. (253 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107083817	ddx20	ENSCVAP00000006014	ENSCVAP00000012414	Survival of motor neuron 1, telomeric.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20; Belongs to the DEAD box helicase family.	0.997
LOC107083817	gemin2	ENSCVAP00000006014	ENSCVAP00000002061	Survival of motor neuron 1, telomeric.	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	0.984
LOC107083817	gemin4	ENSCVAP00000006014	ENSCVAP00000011311	Survival of motor neuron 1, telomeric.	Gem (nuclear organelle) associated protein 4.	0.907
LOC107083817	gemin5	ENSCVAP00000006014	ENSCVAP00000031660	Survival of motor neuron 1, telomeric.	Gem (nuclear organelle) associated protein 5.	0.941
LOC107083817	gemin6	ENSCVAP00000006014	ENSCVAP00000005408	Survival of motor neuron 1, telomeric.	Gem (nuclear organelle) associated protein 6.	0.792
LOC107083817	gemin7	ENSCVAP00000006014	ENSCVAP00000003941	Survival of motor neuron 1, telomeric.	Gem (nuclear organelle) associated protein 7.	0.882
LOC107083817	gemin8	ENSCVAP00000006014	ENSCVAP00000021094	Survival of motor neuron 1, telomeric.	Gem (nuclear organelle) associated protein 8.	0.905
LOC107083817	strap	ENSCVAP00000006014	ENSCVAP00000018206	Survival of motor neuron 1, telomeric.	Serine/threonine kinase receptor associated protein.	0.804
ddx20	LOC107083817	ENSCVAP00000012414	ENSCVAP00000006014	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20; Belongs to the DEAD box helicase family.	Survival of motor neuron 1, telomeric.	0.997
ddx20	gemin2	ENSCVAP00000012414	ENSCVAP00000002061	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20; Belongs to the DEAD box helicase family.	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	0.984
ddx20	gemin4	ENSCVAP00000012414	ENSCVAP00000011311	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20; Belongs to the DEAD box helicase family.	Gem (nuclear organelle) associated protein 4.	0.997
ddx20	gemin5	ENSCVAP00000012414	ENSCVAP00000031660	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20; Belongs to the DEAD box helicase family.	Gem (nuclear organelle) associated protein 5.	0.996
ddx20	gemin6	ENSCVAP00000012414	ENSCVAP00000005408	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20; Belongs to the DEAD box helicase family.	Gem (nuclear organelle) associated protein 6.	0.993
ddx20	gemin7	ENSCVAP00000012414	ENSCVAP00000003941	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20; Belongs to the DEAD box helicase family.	Gem (nuclear organelle) associated protein 7.	0.995
ddx20	gemin8	ENSCVAP00000012414	ENSCVAP00000021094	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20; Belongs to the DEAD box helicase family.	Gem (nuclear organelle) associated protein 8.	0.993
ddx20	strap	ENSCVAP00000012414	ENSCVAP00000018206	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20; Belongs to the DEAD box helicase family.	Serine/threonine kinase receptor associated protein.	0.862
gemin2	LOC107083817	ENSCVAP00000002061	ENSCVAP00000006014	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	Survival of motor neuron 1, telomeric.	0.984
gemin2	ddx20	ENSCVAP00000002061	ENSCVAP00000012414	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20; Belongs to the DEAD box helicase family.	0.984
gemin2	gemin4	ENSCVAP00000002061	ENSCVAP00000011311	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	Gem (nuclear organelle) associated protein 4.	0.918
gemin2	gemin5	ENSCVAP00000002061	ENSCVAP00000031660	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	Gem (nuclear organelle) associated protein 5.	0.869