(10 nodes) Microtubule anchoring at centrosome network (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	nin	Ninein (GSK3B interacting protein). (1355 aa)
	kif3a	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (701 aa)
	cep19	Centrosomal protein 19. (158 aa)
	pcm1	Pericentriolar material 1. (2047 aa)
	LOC107099035	Dynactin 1a. (1263 aa)
	bbs4	Bardet-Biedl syndrome 4. (492 aa)
	ENSCVAP00000003143	Uncharacterized protein. (383 aa)
	LOC107099813	Si:ch211-169p10.1. (564 aa)
	LOC107100456	Coiled-coil domain containing 120. (617 aa)
	LOC107096795	Dynactin 1b. (1139 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000003143	LOC107096795	ENSCVAP00000003143	ENSCVAP00000023278	Uncharacterized protein.	Dynactin 1b.	0.580
ENSCVAP00000003143	LOC107099035	ENSCVAP00000003143	ENSCVAP00000007199	Uncharacterized protein.	Dynactin 1a.	0.580
LOC107096795	ENSCVAP00000003143	ENSCVAP00000023278	ENSCVAP00000003143	Dynactin 1b.	Uncharacterized protein.	0.580
LOC107096795	bbs4	ENSCVAP00000023278	ENSCVAP00000004071	Dynactin 1b.	Bardet-Biedl syndrome 4.	0.462
LOC107096795	kif3a	ENSCVAP00000023278	ENSCVAP00000015959	Dynactin 1b.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.578
LOC107096795	nin	ENSCVAP00000023278	ENSCVAP00000023203	Dynactin 1b.	Ninein (GSK3B interacting protein).	0.440
LOC107099035	ENSCVAP00000003143	ENSCVAP00000007199	ENSCVAP00000003143	Dynactin 1a.	Uncharacterized protein.	0.580
LOC107099035	bbs4	ENSCVAP00000007199	ENSCVAP00000004071	Dynactin 1a.	Bardet-Biedl syndrome 4.	0.462
LOC107099035	kif3a	ENSCVAP00000007199	ENSCVAP00000015959	Dynactin 1a.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.578
LOC107099035	nin	ENSCVAP00000007199	ENSCVAP00000023203	Dynactin 1a.	Ninein (GSK3B interacting protein).	0.440
LOC107099813	nin	ENSCVAP00000000930	ENSCVAP00000023203	Si:ch211-169p10.1.	Ninein (GSK3B interacting protein).	0.451
LOC107100456	nin	ENSCVAP00000000274	ENSCVAP00000023203	Coiled-coil domain containing 120.	Ninein (GSK3B interacting protein).	0.451
bbs4	LOC107096795	ENSCVAP00000004071	ENSCVAP00000023278	Bardet-Biedl syndrome 4.	Dynactin 1b.	0.462
bbs4	LOC107099035	ENSCVAP00000004071	ENSCVAP00000007199	Bardet-Biedl syndrome 4.	Dynactin 1a.	0.462
bbs4	kif3a	ENSCVAP00000004071	ENSCVAP00000015959	Bardet-Biedl syndrome 4.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.487
bbs4	nin	ENSCVAP00000004071	ENSCVAP00000023203	Bardet-Biedl syndrome 4.	Ninein (GSK3B interacting protein).	0.405
bbs4	pcm1	ENSCVAP00000004071	ENSCVAP00000008064	Bardet-Biedl syndrome 4.	Pericentriolar material 1.	0.880
kif3a	LOC107096795	ENSCVAP00000015959	ENSCVAP00000023278	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Dynactin 1b.	0.578
kif3a	LOC107099035	ENSCVAP00000015959	ENSCVAP00000007199	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Dynactin 1a.	0.578
kif3a	bbs4	ENSCVAP00000015959	ENSCVAP00000004071	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Bardet-Biedl syndrome 4.	0.487