10 items (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	snrpd3	Small nuclear ribonucleoprotein Sm D3. (127 aa)
	WDR77	WD repeat domain 77. (335 aa)
	prmt5	Protein arginine N-methyltransferase 5; Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA); Belongs to the class I-like SAM-binding methyltransferase superfamily. (653 aa)
	SNRPD2	Small nuclear ribonucleoprotein Sm D2. (121 aa)
	SNRPN	Small nuclear ribonucleoprotein-associated protein. (241 aa)
	Snrpf	Small nuclear ribonucleoprotein polypeptide F. (126 aa)
	snrpd1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
	clns1a	Chloride channel, nucleotide-sensitive, 1A. (251 aa)
	LOC107081054	Small nuclear ribonucleoprotein Sm D2. (118 aa)
	snrpe	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107081054	SNRPN	ENSCVAP00000028040	ENSCVAP00000011861	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein-associated protein.	0.996
LOC107081054	Snrpf	ENSCVAP00000028040	ENSCVAP00000013124	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein polypeptide F.	0.999
LOC107081054	WDR77	ENSCVAP00000028040	ENSCVAP00000003014	Small nuclear ribonucleoprotein Sm D2.	WD repeat domain 77.	0.503
LOC107081054	clns1a	ENSCVAP00000028040	ENSCVAP00000024733	Small nuclear ribonucleoprotein Sm D2.	Chloride channel, nucleotide-sensitive, 1A.	0.911
LOC107081054	prmt5	ENSCVAP00000028040	ENSCVAP00000004970	Small nuclear ribonucleoprotein Sm D2.	Protein arginine N-methyltransferase 5; Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA); Belongs to the class I-like SAM-binding methyltransferase superfamily.	0.482
LOC107081054	snrpd1	ENSCVAP00000028040	ENSCVAP00000017679	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.999
LOC107081054	snrpd3	ENSCVAP00000028040	ENSCVAP00000000371	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein Sm D3.	0.999
LOC107081054	snrpe	ENSCVAP00000028040	ENSCVAP00000031118	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
SNRPD2	SNRPN	ENSCVAP00000008404	ENSCVAP00000011861	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein-associated protein.	0.964
SNRPD2	Snrpf	ENSCVAP00000008404	ENSCVAP00000013124	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein polypeptide F.	0.996
SNRPD2	WDR77	ENSCVAP00000008404	ENSCVAP00000003014	Small nuclear ribonucleoprotein Sm D2.	WD repeat domain 77.	0.503
SNRPD2	clns1a	ENSCVAP00000008404	ENSCVAP00000024733	Small nuclear ribonucleoprotein Sm D2.	Chloride channel, nucleotide-sensitive, 1A.	0.911
SNRPD2	prmt5	ENSCVAP00000008404	ENSCVAP00000004970	Small nuclear ribonucleoprotein Sm D2.	Protein arginine N-methyltransferase 5; Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA); Belongs to the class I-like SAM-binding methyltransferase superfamily.	0.482
SNRPD2	snrpd1	ENSCVAP00000008404	ENSCVAP00000017679	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.993
SNRPD2	snrpd3	ENSCVAP00000008404	ENSCVAP00000000371	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein Sm D3.	0.993
SNRPD2	snrpe	ENSCVAP00000008404	ENSCVAP00000031118	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.995
SNRPN	LOC107081054	ENSCVAP00000011861	ENSCVAP00000028040	Small nuclear ribonucleoprotein-associated protein.	Small nuclear ribonucleoprotein Sm D2.	0.996
SNRPN	SNRPD2	ENSCVAP00000011861	ENSCVAP00000008404	Small nuclear ribonucleoprotein-associated protein.	Small nuclear ribonucleoprotein Sm D2.	0.964
SNRPN	Snrpf	ENSCVAP00000011861	ENSCVAP00000013124	Small nuclear ribonucleoprotein-associated protein.	Small nuclear ribonucleoprotein polypeptide F.	0.998
SNRPN	WDR77	ENSCVAP00000011861	ENSCVAP00000003014	Small nuclear ribonucleoprotein-associated protein.	WD repeat domain 77.	0.660