7 items (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	clns1a	Chloride channel, nucleotide-sensitive, 1A. (251 aa)
	LOC107081054	Small nuclear ribonucleoprotein Sm D2. (118 aa)
	snrpe	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
	snrpd3	Small nuclear ribonucleoprotein Sm D3. (127 aa)
	SNRPD2	Small nuclear ribonucleoprotein Sm D2. (121 aa)
	Snrpf	Small nuclear ribonucleoprotein polypeptide F. (126 aa)
	snrpd1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107081054	Snrpf	ENSCVAP00000028040	ENSCVAP00000013124	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein polypeptide F.	0.999
LOC107081054	clns1a	ENSCVAP00000028040	ENSCVAP00000024733	Small nuclear ribonucleoprotein Sm D2.	Chloride channel, nucleotide-sensitive, 1A.	0.911
LOC107081054	snrpd1	ENSCVAP00000028040	ENSCVAP00000017679	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.999
LOC107081054	snrpd3	ENSCVAP00000028040	ENSCVAP00000000371	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein Sm D3.	0.999
LOC107081054	snrpe	ENSCVAP00000028040	ENSCVAP00000031118	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
SNRPD2	Snrpf	ENSCVAP00000008404	ENSCVAP00000013124	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein polypeptide F.	0.996
SNRPD2	clns1a	ENSCVAP00000008404	ENSCVAP00000024733	Small nuclear ribonucleoprotein Sm D2.	Chloride channel, nucleotide-sensitive, 1A.	0.911
SNRPD2	snrpd1	ENSCVAP00000008404	ENSCVAP00000017679	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.993
SNRPD2	snrpd3	ENSCVAP00000008404	ENSCVAP00000000371	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein Sm D3.	0.993
SNRPD2	snrpe	ENSCVAP00000008404	ENSCVAP00000031118	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.995
Snrpf	LOC107081054	ENSCVAP00000013124	ENSCVAP00000028040	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein Sm D2.	0.999
Snrpf	SNRPD2	ENSCVAP00000013124	ENSCVAP00000008404	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein Sm D2.	0.996
Snrpf	clns1a	ENSCVAP00000013124	ENSCVAP00000024733	Small nuclear ribonucleoprotein polypeptide F.	Chloride channel, nucleotide-sensitive, 1A.	0.892
Snrpf	snrpd1	ENSCVAP00000013124	ENSCVAP00000017679	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.999
Snrpf	snrpd3	ENSCVAP00000013124	ENSCVAP00000000371	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein Sm D3.	0.999
Snrpf	snrpe	ENSCVAP00000013124	ENSCVAP00000031118	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
clns1a	LOC107081054	ENSCVAP00000024733	ENSCVAP00000028040	Chloride channel, nucleotide-sensitive, 1A.	Small nuclear ribonucleoprotein Sm D2.	0.911
clns1a	SNRPD2	ENSCVAP00000024733	ENSCVAP00000008404	Chloride channel, nucleotide-sensitive, 1A.	Small nuclear ribonucleoprotein Sm D2.	0.911
clns1a	Snrpf	ENSCVAP00000024733	ENSCVAP00000013124	Chloride channel, nucleotide-sensitive, 1A.	Small nuclear ribonucleoprotein polypeptide F.	0.892
clns1a	snrpd1	ENSCVAP00000024733	ENSCVAP00000017679	Chloride channel, nucleotide-sensitive, 1A.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.994