5 items (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	mtor	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family. (2406 aa)
	card11	Uncharacterized protein. (1160 aa)
	clec16a	C-type lectin domain containing 16A. (1122 aa)
	rptor	Regulatory associated protein of MTOR, complex 1. (1373 aa)
	nprl3	NPR3-like, GATOR1 complex subunit. (612 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
mtor	nprl3	ENSCVAP00000020185	ENSCVAP00000013035	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.	NPR3-like, GATOR1 complex subunit.	0.748
mtor	rptor	ENSCVAP00000020185	ENSCVAP00000005829	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.	Regulatory associated protein of MTOR, complex 1.	0.999
nprl3	mtor	ENSCVAP00000013035	ENSCVAP00000020185	NPR3-like, GATOR1 complex subunit.	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.	0.748
nprl3	rptor	ENSCVAP00000013035	ENSCVAP00000005829	NPR3-like, GATOR1 complex subunit.	Regulatory associated protein of MTOR, complex 1.	0.818
rptor	mtor	ENSCVAP00000005829	ENSCVAP00000020185	Regulatory associated protein of MTOR, complex 1.	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.	0.999
rptor	nprl3	ENSCVAP00000005829	ENSCVAP00000013035	Regulatory associated protein of MTOR, complex 1.	NPR3-like, GATOR1 complex subunit.	0.818