(8 nodes) Co-receptor binding network (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107097437	Dickkopf_N domain-containing protein. (256 aa)
	LOC107096868	Bone morphogenetic protein 16. (476 aa)
	dkk1	Dickkopf WNT signaling pathway inhibitor 1a. (261 aa)
	dkk3	Dickkopf WNT signaling pathway inhibitor 3a. (280 aa)
	bmp4	Bone morphogenetic protein 4. (399 aa)
	ENSCVAP00000032740	Dickkopf WNT signaling pathway inhibitor 3b. (251 aa)
	LOC107097442	Dickkopf_N domain-containing protein. (273 aa)
	dkk2	Dickkopf WNT signaling pathway inhibitor 2. (242 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000032740	dkk1	ENSCVAP00000032740	ENSCVAP00000030114	Dickkopf WNT signaling pathway inhibitor 3b.	Dickkopf WNT signaling pathway inhibitor 1a.	0.483
LOC107097437	dkk1	ENSCVAP00000020062	ENSCVAP00000030114	Dickkopf_N domain-containing protein.	Dickkopf WNT signaling pathway inhibitor 1a.	0.477
LOC107097442	dkk1	ENSCVAP00000000307	ENSCVAP00000030114	Dickkopf_N domain-containing protein.	Dickkopf WNT signaling pathway inhibitor 1a.	0.477
bmp4	dkk3	ENSCVAP00000019784	ENSCVAP00000016076	Bone morphogenetic protein 4.	Dickkopf WNT signaling pathway inhibitor 3a.	0.445
dkk1	ENSCVAP00000032740	ENSCVAP00000030114	ENSCVAP00000032740	Dickkopf WNT signaling pathway inhibitor 1a.	Dickkopf WNT signaling pathway inhibitor 3b.	0.483
dkk1	LOC107097437	ENSCVAP00000030114	ENSCVAP00000020062	Dickkopf WNT signaling pathway inhibitor 1a.	Dickkopf_N domain-containing protein.	0.477
dkk1	LOC107097442	ENSCVAP00000030114	ENSCVAP00000000307	Dickkopf WNT signaling pathway inhibitor 1a.	Dickkopf_N domain-containing protein.	0.477
dkk1	dkk2	ENSCVAP00000030114	ENSCVAP00000001318	Dickkopf WNT signaling pathway inhibitor 1a.	Dickkopf WNT signaling pathway inhibitor 2.	0.945
dkk1	dkk3	ENSCVAP00000030114	ENSCVAP00000016076	Dickkopf WNT signaling pathway inhibitor 1a.	Dickkopf WNT signaling pathway inhibitor 3a.	0.483
dkk2	dkk1	ENSCVAP00000001318	ENSCVAP00000030114	Dickkopf WNT signaling pathway inhibitor 2.	Dickkopf WNT signaling pathway inhibitor 1a.	0.945
dkk3	bmp4	ENSCVAP00000016076	ENSCVAP00000019784	Dickkopf WNT signaling pathway inhibitor 3a.	Bone morphogenetic protein 4.	0.445
dkk3	dkk1	ENSCVAP00000016076	ENSCVAP00000030114	Dickkopf WNT signaling pathway inhibitor 3a.	Dickkopf WNT signaling pathway inhibitor 1a.	0.483