STRINGSTRING
LOC107103178 LOC107103178 ipo5 ipo5 pkig pkig LOC107103699 LOC107103699 LOC107089253 LOC107089253 chp1 chp1 ubr5 ubr5 nkd1 nkd1 LOC107090777 LOC107090777 LOC107084711 LOC107084711 Zpr1 Zpr1 LOC107102916 LOC107102916 ect2 ect2 epm2a epm2a nf1 nf1 LOC107097862 LOC107097862 LOC107103176 LOC107103176 LOC107103264 LOC107103264 efcab7 efcab7 dmap1 dmap1 rab23 rab23 tpr tpr ENSCVAP00000004363 ENSCVAP00000004363 sirt6 sirt6 nup58 nup58 ptpn5 ptpn5 LOC107102670 LOC107102670 LOC107091957 LOC107091957 zpr1 zpr1 NUP54 NUP54 smo smo
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC107103178Lipocln_cytosolic_FA-bd_dom domain-containing protein; Belongs to the calycin superfamily. Lipocalin family. (187 aa)
ipo5Karyopherin (importin) beta 3. (1093 aa)
pkigProtein kinase (cAMP-dependent, catalytic) inhibitor gamma. (78 aa)
LOC107103699Transforming growth factor beta; Belongs to the TGF-beta family. (349 aa)
LOC107089253Uncharacterized protein. (159 aa)
chp1Calcineurin-like EF-hand protein 1. (195 aa)
ubr5Ubiquitin protein ligase E3 component n-recognin 5. (2535 aa)
nkd1NKD inhibitor of WNT signaling pathway 1. (443 aa)
LOC107090777Junction plakoglobin a. (724 aa)
LOC107084711Zinc finger CCCH-type containing 12A. (619 aa)
Zpr1ZPR1 zinc finger. (223 aa)
LOC107102916Apolipoprotein Da, duplicate 1; Belongs to the calycin superfamily. Lipocalin family. (186 aa)
ect2Epithelial cell transforming 2. (1047 aa)
epm2aEPM2A glucan phosphatase, laforin. (320 aa)
nf1Neurofibromin 1b. (2729 aa)
LOC107097862Calcineurin-like EF-hand protein 2. (191 aa)
LOC107103176Apolipoprotein Db; Belongs to the calycin superfamily. Lipocalin family. (183 aa)
LOC107103264Nucleolar and coiled-body phosphoprotein 1. (1036 aa)
efcab7EF-hand calcium binding domain 7. (614 aa)
dmap1DNA methyltransferase 1 associated protein 1. (487 aa)
rab23RAB23, member RAS oncogene family. (235 aa)
tprTranslocated promoter region a, nuclear basket protein. (1972 aa)
ENSCVAP00000004363WW domain-containing protein. (198 aa)
sirt6Sirtuin 6. (349 aa)
nup58Nucleoporin 58. (592 aa)
ptpn5Protein tyrosine phosphatase non-receptor type 5. (570 aa)
LOC107102670Si:dkey-206d17.12. (600 aa)
LOC107091957Translocated promoter region b, nuclear basket protein. (2192 aa)
zpr1ZPR1 zinc finger. (170 aa)
NUP54Nucleoporin 54. (566 aa)
smoSmoothened, frizzled class receptor; Belongs to the G-protein coupled receptor Fz/Smo family. (809 aa)
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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