(26 nodes) Apoptotic cell clearance network (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107082942	Ras homolog family member Gb. (191 aa)
	LOC107081492	XK-related protein. (608 aa)
	ENSCVAP00000001255	Spatacsin_C domain-containing protein. (1125 aa)
	LOC107103828	XK-related protein. (401 aa)
	LOC107103833	XK-related protein. (415 aa)
	ENSCVAP00000004739	Uncharacterized protein. (290 aa)
	xkr6	XK-related protein. (578 aa)
	mertk	C-mer proto-oncogene tyrosine kinase a. (952 aa)
	gas6	Uncharacterized protein. (652 aa)
	rhobtb2	Rho related BTB domain containing 2a. (722 aa)
	LOC107097101	Platelet endothelial aggregation receptor 1. (772 aa)
	MEGF11	Multiple EGF like domains 11. (1072 aa)
	ENSCVAP00000017360	Uncharacterized protein. (186 aa)
	LOC107084546	Rho related BTB domain containing 4. (734 aa)
	LOC107089030	Uncharacterized protein. (191 aa)
	ENSCVAP00000018233	Ras homolog gene family, member Gd. (110 aa)
	xkr9	XK-related protein. (372 aa)
	tyrobp	Uncharacterized protein. (108 aa)
	AXL	AXL receptor tyrosine kinase. (912 aa)
	LOC107102469	XK-related protein. (638 aa)
	LOC107088726	XK-related protein. (586 aa)
	megf11	Multiple EGF-like-domains 11. (955 aa)
	scarb1	Scavenger receptor class B, member 1; Belongs to the CD36 family. (549 aa)
	LOC107090695	XK-related protein. (565 aa)
	xkr4	XK-related protein. (600 aa)
	LOC107094123	XK-related protein. (569 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AXL	gas6	ENSCVAP00000025125	ENSCVAP00000007655	AXL receptor tyrosine kinase.	Uncharacterized protein.	0.725
ENSCVAP00000018233	LOC107082942	ENSCVAP00000018233	ENSCVAP00000017654	Ras homolog gene family, member Gd.	Ras homolog family member Gb.	0.901
ENSCVAP00000018233	LOC107089030	ENSCVAP00000018233	ENSCVAP00000018216	Ras homolog gene family, member Gd.	Uncharacterized protein.	0.901
LOC107082942	ENSCVAP00000018233	ENSCVAP00000017654	ENSCVAP00000018233	Ras homolog family member Gb.	Ras homolog gene family, member Gd.	0.901
LOC107082942	LOC107089030	ENSCVAP00000017654	ENSCVAP00000018216	Ras homolog family member Gb.	Uncharacterized protein.	0.901
LOC107084546	rhobtb2	ENSCVAP00000018201	ENSCVAP00000008283	Rho related BTB domain containing 4.	Rho related BTB domain containing 2a.	0.901
LOC107089030	ENSCVAP00000018233	ENSCVAP00000018216	ENSCVAP00000018233	Uncharacterized protein.	Ras homolog gene family, member Gd.	0.901
LOC107089030	LOC107082942	ENSCVAP00000018216	ENSCVAP00000017654	Uncharacterized protein.	Ras homolog family member Gb.	0.901
gas6	AXL	ENSCVAP00000007655	ENSCVAP00000025125	Uncharacterized protein.	AXL receptor tyrosine kinase.	0.725
gas6	mertk	ENSCVAP00000007655	ENSCVAP00000007518	Uncharacterized protein.	C-mer proto-oncogene tyrosine kinase a.	0.725
mertk	gas6	ENSCVAP00000007518	ENSCVAP00000007655	C-mer proto-oncogene tyrosine kinase a.	Uncharacterized protein.	0.725
rhobtb2	LOC107084546	ENSCVAP00000008283	ENSCVAP00000018201	Rho related BTB domain containing 2a.	Rho related BTB domain containing 4.	0.901