(15 nodes) Basal cortex network (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107094115	Pleckstrin homology-like domain, family B, member 2b. (1492 aa)
	ENSCVAP00000011654	Uncharacterized protein. (79 aa)
	ENSCVAP00000011599	Uncharacterized protein. (142 aa)
	ENSCVAP00000009343	Uncharacterized protein. (400 aa)
	ENSCVAP00000009329	PH domain-containing protein. (101 aa)
	ENSCVAP00000007946	Uncharacterized protein. (230 aa)
	ENSCVAP00000027541	CLASP_N domain-containing protein. (314 aa)
	Phldb3	PH domain-containing protein. (315 aa)
	ENSCVAP00000030120	Uncharacterized protein. (99 aa)
	ENSCVAP00000030129	CLASP_N domain-containing protein. (449 aa)
	Phldb1	PH domain-containing protein. (101 aa)
	clasp2	Cytoplasmic linker associated protein 2. (1499 aa)
	ENSCVAP00000026913	PH domain-containing protein. (101 aa)
	ENSCVAP00000026914	Pleckstrin homology-like domain, family B, member 1a. (904 aa)
	ENSCVAP00000027514	Uncharacterized protein. (167 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000007946	ENSCVAP00000009329	ENSCVAP00000007946	ENSCVAP00000009329	Uncharacterized protein.	PH domain-containing protein.	0.797
ENSCVAP00000007946	ENSCVAP00000026913	ENSCVAP00000007946	ENSCVAP00000026913	Uncharacterized protein.	PH domain-containing protein.	0.815
ENSCVAP00000007946	Phldb1	ENSCVAP00000007946	ENSCVAP00000007915	Uncharacterized protein.	PH domain-containing protein.	0.822
ENSCVAP00000007946	Phldb3	ENSCVAP00000007946	ENSCVAP00000028365	Uncharacterized protein.	PH domain-containing protein.	0.593
ENSCVAP00000009329	ENSCVAP00000007946	ENSCVAP00000009329	ENSCVAP00000007946	PH domain-containing protein.	Uncharacterized protein.	0.797
ENSCVAP00000009329	ENSCVAP00000009343	ENSCVAP00000009329	ENSCVAP00000009343	PH domain-containing protein.	Uncharacterized protein.	0.516
ENSCVAP00000009343	ENSCVAP00000009329	ENSCVAP00000009343	ENSCVAP00000009329	Uncharacterized protein.	PH domain-containing protein.	0.516
ENSCVAP00000009343	ENSCVAP00000026913	ENSCVAP00000009343	ENSCVAP00000026913	Uncharacterized protein.	PH domain-containing protein.	0.464
ENSCVAP00000009343	Phldb1	ENSCVAP00000009343	ENSCVAP00000007915	Uncharacterized protein.	PH domain-containing protein.	0.469
ENSCVAP00000011599	ENSCVAP00000027514	ENSCVAP00000011599	ENSCVAP00000027514	Uncharacterized protein.	Uncharacterized protein.	0.932
ENSCVAP00000011599	ENSCVAP00000027541	ENSCVAP00000011599	ENSCVAP00000027541	Uncharacterized protein.	CLASP_N domain-containing protein.	0.870
ENSCVAP00000011599	ENSCVAP00000030129	ENSCVAP00000011599	ENSCVAP00000030129	Uncharacterized protein.	CLASP_N domain-containing protein.	0.847
ENSCVAP00000026913	ENSCVAP00000007946	ENSCVAP00000026913	ENSCVAP00000007946	PH domain-containing protein.	Uncharacterized protein.	0.815
ENSCVAP00000026913	ENSCVAP00000009343	ENSCVAP00000026913	ENSCVAP00000009343	PH domain-containing protein.	Uncharacterized protein.	0.464
ENSCVAP00000026914	Phldb3	ENSCVAP00000026914	ENSCVAP00000028365	Pleckstrin homology-like domain, family B, member 1a.	PH domain-containing protein.	0.577
ENSCVAP00000027514	ENSCVAP00000011599	ENSCVAP00000027514	ENSCVAP00000011599	Uncharacterized protein.	Uncharacterized protein.	0.932
ENSCVAP00000027514	ENSCVAP00000030129	ENSCVAP00000027514	ENSCVAP00000030129	Uncharacterized protein.	CLASP_N domain-containing protein.	0.880
ENSCVAP00000027541	ENSCVAP00000011599	ENSCVAP00000027541	ENSCVAP00000011599	CLASP_N domain-containing protein.	Uncharacterized protein.	0.870
ENSCVAP00000030129	ENSCVAP00000011599	ENSCVAP00000030129	ENSCVAP00000011599	CLASP_N domain-containing protein.	Uncharacterized protein.	0.847
ENSCVAP00000030129	ENSCVAP00000027514	ENSCVAP00000030129	ENSCVAP00000027514	CLASP_N domain-containing protein.	Uncharacterized protein.	0.880