(30 nodes) Sarcomere organization network (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TNNT1	Troponin T1, slow skeletal type. (160 aa)
	myoz2	Myozenin 2a. (264 aa)
	ENSCVAP00000018805	Uncharacterized protein. (385 aa)
	SYNPO2L	Synaptopodin 2-like b. (1160 aa)
	LOC107098111	Uncharacterized protein. (220 aa)
	srf	MADS-box domain-containing protein. (596 aa)
	lrrc39	Leucine rich repeat containing 39. (344 aa)
	LOC107089160	Troponin T type 2b (cardiac). (242 aa)
	orai1	ORAI calcium release-activated calcium modulator 1b. (223 aa)
	LOC107081379	Myozenin 2b. (229 aa)
	LOC107093602	Troponin T type 3a (skeletal, fast). (285 aa)
	ENSCVAP00000012785	Troponin T type 2a (cardiac). (209 aa)
	LOC107089146	Cysteine and glycine-rich protein 1b. (215 aa)
	MYOZ1	Myozenin 1. (311 aa)
	LOC107086580	BTB domain-containing protein. (606 aa)
	LOC107087065	Cysteine and glycine-rich protein 2. (193 aa)
	LOC107083873	Uncharacterized protein. (350 aa)
	LOC107103763	Cysteine and glycine-rich protein 1a. (193 aa)
	csrp3	Cysteine and glycine-rich protein 3 (cardiac LIM protein). (221 aa)
	klhl41	Kelch-like family member 41a. (598 aa)
	LOC107101197	Cysteine and glycine-rich protein 1-like. (193 aa)
	LOC107101247	Troponin T type 1 (skeletal, slow). (263 aa)
	tcap	Titin-cap (telethonin). (179 aa)
	LOC107099558	Uncharacterized protein. (228 aa)
	ENSCVAP00000025370	Protein kinase domain-containing protein. (401 aa)
	LOC107100125	Uncharacterized protein. (558 aa)
	ENSCVAP00000025060	Uncharacterized protein. (236 aa)
	WDR1	WD repeat domain 1. (605 aa)
	LOC107082632	MADS-box domain-containing protein. (489 aa)
	ENSCVAP00000022968	Uncharacterized protein. (207 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000012785	ENSCVAP00000022968	ENSCVAP00000012785	ENSCVAP00000022968	Troponin T type 2a (cardiac).	Uncharacterized protein.	0.416
ENSCVAP00000012785	LOC107083873	ENSCVAP00000012785	ENSCVAP00000005169	Troponin T type 2a (cardiac).	Uncharacterized protein.	0.441
ENSCVAP00000012785	LOC107089160	ENSCVAP00000012785	ENSCVAP00000012789	Troponin T type 2a (cardiac).	Troponin T type 2b (cardiac).	0.901
ENSCVAP00000012785	LOC107093602	ENSCVAP00000012785	ENSCVAP00000030966	Troponin T type 2a (cardiac).	Troponin T type 3a (skeletal, fast).	0.440
ENSCVAP00000012785	LOC107101247	ENSCVAP00000012785	ENSCVAP00000027819	Troponin T type 2a (cardiac).	Troponin T type 1 (skeletal, slow).	0.417
ENSCVAP00000012785	MYOZ1	ENSCVAP00000012785	ENSCVAP00000008937	Troponin T type 2a (cardiac).	Myozenin 1.	0.463
ENSCVAP00000012785	TNNT1	ENSCVAP00000012785	ENSCVAP00000022947	Troponin T type 2a (cardiac).	Troponin T1, slow skeletal type.	0.414
ENSCVAP00000012785	csrp3	ENSCVAP00000012785	ENSCVAP00000003707	Troponin T type 2a (cardiac).	Cysteine and glycine-rich protein 3 (cardiac LIM protein).	0.405
ENSCVAP00000012785	tcap	ENSCVAP00000012785	ENSCVAP00000026486	Troponin T type 2a (cardiac).	Titin-cap (telethonin).	0.403
ENSCVAP00000022968	ENSCVAP00000012785	ENSCVAP00000022968	ENSCVAP00000012785	Uncharacterized protein.	Troponin T type 2a (cardiac).	0.416
ENSCVAP00000022968	LOC107083873	ENSCVAP00000022968	ENSCVAP00000005169	Uncharacterized protein.	Uncharacterized protein.	0.427
ENSCVAP00000022968	LOC107089160	ENSCVAP00000022968	ENSCVAP00000012789	Uncharacterized protein.	Troponin T type 2b (cardiac).	0.418
ENSCVAP00000022968	LOC107093602	ENSCVAP00000022968	ENSCVAP00000030966	Uncharacterized protein.	Troponin T type 3a (skeletal, fast).	0.428
ENSCVAP00000022968	MYOZ1	ENSCVAP00000022968	ENSCVAP00000008937	Uncharacterized protein.	Myozenin 1.	0.463
ENSCVAP00000025060	LOC107083873	ENSCVAP00000025060	ENSCVAP00000005169	Uncharacterized protein.	Uncharacterized protein.	0.413
ENSCVAP00000025060	LOC107093602	ENSCVAP00000025060	ENSCVAP00000030966	Uncharacterized protein.	Troponin T type 3a (skeletal, fast).	0.412
ENSCVAP00000025060	LOC107101247	ENSCVAP00000025060	ENSCVAP00000027819	Uncharacterized protein.	Troponin T type 1 (skeletal, slow).	0.413
ENSCVAP00000025060	MYOZ1	ENSCVAP00000025060	ENSCVAP00000008937	Uncharacterized protein.	Myozenin 1.	0.463
LOC107081379	LOC107100125	ENSCVAP00000032254	ENSCVAP00000025069	Myozenin 2b.	Uncharacterized protein.	0.460
LOC107081379	csrp3	ENSCVAP00000032254	ENSCVAP00000003707	Myozenin 2b.	Cysteine and glycine-rich protein 3 (cardiac LIM protein).	0.776