34 items (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	snrpd3	Small nuclear ribonucleoprotein Sm D3. (127 aa)
	txnl4a	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
	snrnp40	Small nuclear ribonucleoprotein 40 (U5). (347 aa)
	prpf31	PRP31 pre-mRNA processing factor 31 homolog (yeast). (508 aa)
	SART1	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (771 aa)
	SNRPD2	Small nuclear ribonucleoprotein Sm D2. (121 aa)
	lsm4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (143 aa)
	eftud2	Elongation factor Tu GTP binding domain containing 2. (1003 aa)
	SNRPN	Small nuclear ribonucleoprotein-associated protein. (241 aa)
	Snrpf	Small nuclear ribonucleoprotein polypeptide F. (126 aa)
	ddx23	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23. (802 aa)
	snrnp200	Small nuclear ribonucleoprotein 200 (U5). (2056 aa)
	lsm8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
	snrpd1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
	lsm7	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (108 aa)
	LOC107098670	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (131 aa)
	Prpf4	WD_REPEATS_REGION domain-containing protein. (123 aa)
	usp39	Ubiquitin specific peptidase 39. (498 aa)
	lsm6	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (80 aa)
	zmat2	Zinc finger, matrin-type 2. (201 aa)
	LOC107081919	Zgc:153119. (298 aa)
	lsm5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
	lsm3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
	prpf3	PRP3 pre-mRNA processing factor 3 homolog (yeast). (695 aa)
	ENSCVAP00000025291	Uncharacterized protein. (465 aa)
	prpf6	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (969 aa)
	prpf18	PRP18 pre-mRNA processing factor 18 homolog (yeast). (350 aa)
	txnl4b	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (149 aa)
	LOC107081054	Small nuclear ribonucleoprotein Sm D2. (118 aa)
	lsm2	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (106 aa)
	ENSCVAP00000029121	WD_REPEATS_REGION domain-containing protein. (174 aa)
	snu13	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
	ENSCVAP00000031045	Uncharacterized protein. (115 aa)
	snrpe	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000025291	ENSCVAP00000029121	ENSCVAP00000025291	ENSCVAP00000029121	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.920
ENSCVAP00000025291	ENSCVAP00000031045	ENSCVAP00000025291	ENSCVAP00000031045	Uncharacterized protein.	Uncharacterized protein.	0.753
ENSCVAP00000025291	LOC107081054	ENSCVAP00000025291	ENSCVAP00000028040	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D2.	0.925
ENSCVAP00000025291	LOC107081919	ENSCVAP00000025291	ENSCVAP00000021790	Uncharacterized protein.	Zgc:153119.	0.793
ENSCVAP00000025291	LOC107098670	ENSCVAP00000025291	ENSCVAP00000018552	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.753
ENSCVAP00000025291	Prpf4	ENSCVAP00000025291	ENSCVAP00000018985	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.920
ENSCVAP00000025291	SART1	ENSCVAP00000025291	ENSCVAP00000008057	Uncharacterized protein.	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	0.971
ENSCVAP00000025291	SNRPD2	ENSCVAP00000025291	ENSCVAP00000008404	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D2.	0.925
ENSCVAP00000025291	SNRPN	ENSCVAP00000025291	ENSCVAP00000011861	Uncharacterized protein.	Small nuclear ribonucleoprotein-associated protein.	0.944
ENSCVAP00000025291	Snrpf	ENSCVAP00000025291	ENSCVAP00000013124	Uncharacterized protein.	Small nuclear ribonucleoprotein polypeptide F.	0.968
ENSCVAP00000025291	ddx23	ENSCVAP00000025291	ENSCVAP00000013230	Uncharacterized protein.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23.	0.980
ENSCVAP00000025291	eftud2	ENSCVAP00000025291	ENSCVAP00000010358	Uncharacterized protein.	Elongation factor Tu GTP binding domain containing 2.	0.998
ENSCVAP00000025291	lsm2	ENSCVAP00000025291	ENSCVAP00000028389	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.925
ENSCVAP00000025291	lsm3	ENSCVAP00000025291	ENSCVAP00000023525	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.863
ENSCVAP00000025291	lsm4	ENSCVAP00000025291	ENSCVAP00000008739	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.753
ENSCVAP00000025291	lsm5	ENSCVAP00000025291	ENSCVAP00000021916	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.910
ENSCVAP00000025291	lsm6	ENSCVAP00000025291	ENSCVAP00000020337	Uncharacterized protein.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.917
ENSCVAP00000025291	lsm7	ENSCVAP00000025291	ENSCVAP00000017915	Uncharacterized protein.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.916
ENSCVAP00000025291	lsm8	ENSCVAP00000025291	ENSCVAP00000017454	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.925
ENSCVAP00000025291	prpf18	ENSCVAP00000025291	ENSCVAP00000026645	Uncharacterized protein.	PRP18 pre-mRNA processing factor 18 homolog (yeast).	0.873