13 items (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cirbp	Cold inducible RNA binding protein b. (185 aa)
	LOC107084081	Cugbp, Elav-like family member 3a. (452 aa)
	ncl	Nucleolin. (685 aa)
	snw1	SNW domain containing 1. (498 aa)
	prpf19	Pre-mRNA processing factor 19. (505 aa)
	rbmx	RNA binding motif protein X-linked. (385 aa)
	LOC107088821	Cugbp, Elav-like family member 3b. (458 aa)
	sf3b4	Splicing factor 3b, subunit 4. (389 aa)
	nup98	Nucleoporin 98. (1810 aa)
	tra2b	Transformer 2 beta homolog. (275 aa)
	celf4	CUGBP, Elav-like family member 4. (444 aa)
	dazap1	DAZ associated protein 1. (418 aa)
	tra2a	RRM domain-containing protein. (291 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cirbp	ncl	ENSCVAP00000022292	ENSCVAP00000010487	Cold inducible RNA binding protein b.	Nucleolin.	0.475
cirbp	prpf19	ENSCVAP00000022292	ENSCVAP00000009933	Cold inducible RNA binding protein b.	Pre-mRNA processing factor 19.	0.448
cirbp	rbmx	ENSCVAP00000022292	ENSCVAP00000007230	Cold inducible RNA binding protein b.	RNA binding motif protein X-linked.	0.478
cirbp	sf3b4	ENSCVAP00000022292	ENSCVAP00000022717	Cold inducible RNA binding protein b.	Splicing factor 3b, subunit 4.	0.499
cirbp	tra2a	ENSCVAP00000022292	ENSCVAP00000002775	Cold inducible RNA binding protein b.	RRM domain-containing protein.	0.564
cirbp	tra2b	ENSCVAP00000022292	ENSCVAP00000003418	Cold inducible RNA binding protein b.	Transformer 2 beta homolog.	0.560
dazap1	tra2b	ENSCVAP00000030198	ENSCVAP00000003418	DAZ associated protein 1.	Transformer 2 beta homolog.	0.463
ncl	cirbp	ENSCVAP00000010487	ENSCVAP00000022292	Nucleolin.	Cold inducible RNA binding protein b.	0.475
ncl	rbmx	ENSCVAP00000010487	ENSCVAP00000007230	Nucleolin.	RNA binding motif protein X-linked.	0.613
ncl	tra2a	ENSCVAP00000010487	ENSCVAP00000002775	Nucleolin.	RRM domain-containing protein.	0.448
ncl	tra2b	ENSCVAP00000010487	ENSCVAP00000003418	Nucleolin.	Transformer 2 beta homolog.	0.440
prpf19	cirbp	ENSCVAP00000009933	ENSCVAP00000022292	Pre-mRNA processing factor 19.	Cold inducible RNA binding protein b.	0.448
prpf19	rbmx	ENSCVAP00000009933	ENSCVAP00000007230	Pre-mRNA processing factor 19.	RNA binding motif protein X-linked.	0.519
prpf19	sf3b4	ENSCVAP00000009933	ENSCVAP00000022717	Pre-mRNA processing factor 19.	Splicing factor 3b, subunit 4.	0.934
prpf19	snw1	ENSCVAP00000009933	ENSCVAP00000010064	Pre-mRNA processing factor 19.	SNW domain containing 1.	0.994
prpf19	tra2a	ENSCVAP00000009933	ENSCVAP00000002775	Pre-mRNA processing factor 19.	RRM domain-containing protein.	0.433
prpf19	tra2b	ENSCVAP00000009933	ENSCVAP00000003418	Pre-mRNA processing factor 19.	Transformer 2 beta homolog.	0.433
rbmx	cirbp	ENSCVAP00000007230	ENSCVAP00000022292	RNA binding motif protein X-linked.	Cold inducible RNA binding protein b.	0.478
rbmx	ncl	ENSCVAP00000007230	ENSCVAP00000010487	RNA binding motif protein X-linked.	Nucleolin.	0.613
rbmx	prpf19	ENSCVAP00000007230	ENSCVAP00000009933	RNA binding motif protein X-linked.	Pre-mRNA processing factor 19.	0.519