(14 nodes) Set1C/COMPASS complex network (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	hcfc2	Host cell factor C2. (683 aa)
	wdr5	WD repeat domain 5. (333 aa)
	ENSCVAP00000027617	Uncharacterized protein. (138 aa)
	LOC107099357	CXXC finger protein 1a. (478 aa)
	cxxc1	CXXC finger protein 1b. (561 aa)
	hcfc1	Host cell factor C1a. (1738 aa)
	LOC107091290	SET domain containing 1B, histone lysine methyltransferase a. (1782 aa)
	ash2l	Ash2 like, histone lysine methyltransferase complex subunit. (593 aa)
	rbbp5	Retinoblastoma binding protein 5. (473 aa)
	setd1a	SET domain containing 1A, histone lysine methyltransferase. (2177 aa)
	LOC107103115	WD_REPEATS_REGION domain-containing protein. (315 aa)
	dpy30	Dpy-30 histone methyltransferase complex regulatory subunit. (105 aa)
	wdr82	WD repeat domain 82. (313 aa)
	ENSCVAP00000000947	Uncharacterized protein. (279 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000000947	LOC107091290	ENSCVAP00000000947	ENSCVAP00000018734	Uncharacterized protein.	SET domain containing 1B, histone lysine methyltransferase a.	0.747
ENSCVAP00000000947	LOC107099357	ENSCVAP00000000947	ENSCVAP00000020544	Uncharacterized protein.	CXXC finger protein 1a.	0.582
ENSCVAP00000000947	LOC107103115	ENSCVAP00000000947	ENSCVAP00000007144	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.596
ENSCVAP00000000947	ash2l	ENSCVAP00000000947	ENSCVAP00000017212	Uncharacterized protein.	Ash2 like, histone lysine methyltransferase complex subunit.	0.835
ENSCVAP00000000947	cxxc1	ENSCVAP00000000947	ENSCVAP00000020046	Uncharacterized protein.	CXXC finger protein 1b.	0.582
ENSCVAP00000000947	dpy30	ENSCVAP00000000947	ENSCVAP00000006931	Uncharacterized protein.	Dpy-30 histone methyltransferase complex regulatory subunit.	0.668
ENSCVAP00000000947	hcfc1	ENSCVAP00000000947	ENSCVAP00000020034	Uncharacterized protein.	Host cell factor C1a.	0.900
ENSCVAP00000000947	hcfc2	ENSCVAP00000000947	ENSCVAP00000001660	Uncharacterized protein.	Host cell factor C2.	0.902
ENSCVAP00000000947	rbbp5	ENSCVAP00000000947	ENSCVAP00000013564	Uncharacterized protein.	Retinoblastoma binding protein 5.	0.772
ENSCVAP00000000947	setd1a	ENSCVAP00000000947	ENSCVAP00000009670	Uncharacterized protein.	SET domain containing 1A, histone lysine methyltransferase.	0.747
ENSCVAP00000000947	wdr5	ENSCVAP00000000947	ENSCVAP00000028926	Uncharacterized protein.	WD repeat domain 5.	0.808
ENSCVAP00000000947	wdr82	ENSCVAP00000000947	ENSCVAP00000005097	Uncharacterized protein.	WD repeat domain 82.	0.656
ENSCVAP00000027617	LOC107091290	ENSCVAP00000027617	ENSCVAP00000018734	Uncharacterized protein.	SET domain containing 1B, histone lysine methyltransferase a.	0.412
ENSCVAP00000027617	dpy30	ENSCVAP00000027617	ENSCVAP00000006931	Uncharacterized protein.	Dpy-30 histone methyltransferase complex regulatory subunit.	0.546
ENSCVAP00000027617	setd1a	ENSCVAP00000027617	ENSCVAP00000009670	Uncharacterized protein.	SET domain containing 1A, histone lysine methyltransferase.	0.412
LOC107091290	ENSCVAP00000000947	ENSCVAP00000018734	ENSCVAP00000000947	SET domain containing 1B, histone lysine methyltransferase a.	Uncharacterized protein.	0.747
LOC107091290	ENSCVAP00000027617	ENSCVAP00000018734	ENSCVAP00000027617	SET domain containing 1B, histone lysine methyltransferase a.	Uncharacterized protein.	0.412
LOC107091290	LOC107099357	ENSCVAP00000018734	ENSCVAP00000020544	SET domain containing 1B, histone lysine methyltransferase a.	CXXC finger protein 1a.	0.888
LOC107091290	LOC107103115	ENSCVAP00000018734	ENSCVAP00000007144	SET domain containing 1B, histone lysine methyltransferase a.	WD_REPEATS_REGION domain-containing protein.	0.877
LOC107091290	ash2l	ENSCVAP00000018734	ENSCVAP00000017212	SET domain containing 1B, histone lysine methyltransferase a.	Ash2 like, histone lysine methyltransferase complex subunit.	0.982