(68 nodes) Oogenesis network (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	WDR77	WD repeat domain 77. (335 aa)
	ENSCVAP00000003299	Uncharacterized protein. (533 aa)
	ZNF830	Zinc finger protein 830. (336 aa)
	ENSCVAP00000005537	Nanos homolog 2; Belongs to the nanos family. (135 aa)
	mettl3	Methyltransferase like 3; Belongs to the MT-A70-like family. (588 aa)
	LOC107091665	Progestin and adipoQ receptor family member VII, b. (352 aa)
	LOC107099037	Tudor domain containing 7 b. (1134 aa)
	ENSCVAP00000007651	Uncharacterized protein. (65 aa)
	dazl	Deleted in azoospermia-like. (201 aa)
	ccnb1	Cyclin B1; Belongs to the cyclin family. (400 aa)
	ptpn9	Protein tyrosine phosphatase non-receptor type 9a. (570 aa)
	MARF1	Meiosis regulator and mRNA stability factor 1. (1791 aa)
	trip13	Thyroid hormone receptor interactor 13; Belongs to the AAA ATPase family. (429 aa)
	LOC107085333	Progestin and adipoQ receptor family member Va. (358 aa)
	PTX3	Pentraxin 3, long a. (453 aa)
	ENSCVAP00000009943	Nanos homolog 3; Belongs to the nanos family. (202 aa)
	ENSCVAP00000010146	Tower domain-containing protein. (2271 aa)
	spo11	SPO11 initiator of meiotic double stranded breaks. (387 aa)
	ENSCVAP00000010417	Uncharacterized protein. (149 aa)
	ENSCVAP00000010428	Uncharacterized protein. (179 aa)
	ereg	EGF-like domain-containing protein. (151 aa)
	LOC107089183	Nanos homolog 1; Belongs to the nanos family. (222 aa)
	ENSCVAP00000011755	TAN domain-containing protein. (119 aa)
	Atm	Uncharacterized protein. (145 aa)
	LOC107089785	Progestin and adipoQ receptor family member VII, a. (352 aa)
	ENSCVAP00000012554	Uncharacterized protein. (585 aa)
	ythdf2	YTH N(6)-methyladenosine RNA binding protein 2. (635 aa)
	LOC107100556	Progestin and adipoQ receptor family member 8. (356 aa)
	Tdrd15	Si:dkeyp-93d12.1. (1829 aa)
	LOC107085337	Pleiotrophin. (161 aa)
	LOC107102826	Endothelin receptor type Aa; Belongs to the G-protein coupled receptor 1 family. (442 aa)
	LOC107080667	Uncharacterized protein. (202 aa)
	gdf9	Growth differentiation factor 9. (429 aa)
	LOC107085722	Protein tyrosine phosphatase non-receptor type 9b. (713 aa)
	ercc1	Excision repair cross-complementation group 1. (351 aa)
	LOC107104034	Tudor and KH domain containing. (438 aa)
	mthfsd	Methenyltetrahydrofolate synthetase domain containing. (477 aa)
	tdrd1	Tudor domain containing 1. (989 aa)
	tnfaip6	Tumor necrosis factor, alpha-induced protein 6. (268 aa)
	LOC107086563	Progestin and adipoQ receptor family member VI. (427 aa)
	fst	Follistatin a. (347 aa)
	ENSCVAP00000030860	Uncharacterized protein. (340 aa)
	ENSCVAP00000030497	Nanos-type domain-containing protein; Belongs to the nanos family. (191 aa)
	LOC107101106	Tudor domain containing 7 a. (975 aa)
	ENSCVAP00000030383	Tudor domain-containing protein. (191 aa)
	ENSCVAP00000028334	Luteinizing hormone, beta polypeptide. (142 aa)
	YTHDC2	YTH domain containing 2. (1387 aa)
	ythdc1	YTH domain containing 1. (676 aa)
	piwil2	Piwi-like RNA-mediated gene silencing 2; Belongs to the argonaute family. (1014 aa)
	LOC107083382	BCL2 apoptosis regulator b. (227 aa)
	LOC107093730	ZP domain-containing protein. (526 aa)
	ybx1	Y box binding protein 1. (299 aa)
	pld6	PLD phosphodiesterase domain-containing protein. (212 aa)
	ENSCVAP00000021669	Zinc finger GATA like protein 1. (400 aa)
	star	Steroidogenic acute regulatory protein, mitochondrial; Plays a key role in steroid hormone synthesis by enhancing the metabolism of cholesterol into pregnenolone. Mediates the transfer of cholesterol from the outer mitochondrial membrane to the inner mitochondrial membrane where it is cleaved to pregnenolone. (285 aa)
	mlh1	MutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli). (719 aa)
	GPR149	G protein-coupled receptor 149. (729 aa)
	ENSCVAP00000024289	Endothelin receptor type Ab. (353 aa)
	dctn2	Dynactin 2 (p50). (373 aa)
	fbxo5	F-box protein 5. (426 aa)
	LOC107089243	ZP domain-containing protein. (421 aa)
	henmt1	HEN methyltransferase 1. (365 aa)
	ENSCVAP00000026727	Uncharacterized protein. (694 aa)
	TUT4	Terminal uridylyl transferase 4. (1495 aa)
	ENSCVAP00000000595	Uncharacterized protein. (599 aa)
	LOC107102657	Uncharacterized protein. (143 aa)
	ENSCVAP00000000698	Uncharacterized protein. (211 aa)
	dmc1	DNA meiotic recombinase 1; Belongs to the RecA family. (261 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Atm	ENSCVAP00000010146	ENSCVAP00000011758	ENSCVAP00000010146	Uncharacterized protein.	Tower domain-containing protein.	0.829
Atm	ENSCVAP00000011755	ENSCVAP00000011758	ENSCVAP00000011755	Uncharacterized protein.	TAN domain-containing protein.	0.922
Atm	dmc1	ENSCVAP00000011758	ENSCVAP00000001455	Uncharacterized protein.	DNA meiotic recombinase 1; Belongs to the RecA family.	0.743
Atm	ercc1	ENSCVAP00000011758	ENSCVAP00000016561	Uncharacterized protein.	Excision repair cross-complementation group 1.	0.587
Atm	mlh1	ENSCVAP00000011758	ENSCVAP00000022067	Uncharacterized protein.	MutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli).	0.753
Atm	spo11	ENSCVAP00000011758	ENSCVAP00000010409	Uncharacterized protein.	SPO11 initiator of meiotic double stranded breaks.	0.569
ENSCVAP00000000595	ENSCVAP00000003299	ENSCVAP00000000595	ENSCVAP00000003299	Uncharacterized protein.	Uncharacterized protein.	0.485
ENSCVAP00000000595	LOC107104034	ENSCVAP00000000595	ENSCVAP00000017203	Uncharacterized protein.	Tudor and KH domain containing.	0.553
ENSCVAP00000000595	piwil2	ENSCVAP00000000595	ENSCVAP00000019527	Uncharacterized protein.	Piwi-like RNA-mediated gene silencing 2; Belongs to the argonaute family.	0.904
ENSCVAP00000000698	YTHDC2	ENSCVAP00000000698	ENSCVAP00000018093	Uncharacterized protein.	YTH domain containing 2.	0.696
ENSCVAP00000000698	ythdc1	ENSCVAP00000000698	ENSCVAP00000019018	Uncharacterized protein.	YTH domain containing 1.	0.426
ENSCVAP00000003299	ENSCVAP00000000595	ENSCVAP00000003299	ENSCVAP00000000595	Uncharacterized protein.	Uncharacterized protein.	0.485
ENSCVAP00000003299	ENSCVAP00000009943	ENSCVAP00000003299	ENSCVAP00000009943	Uncharacterized protein.	Nanos homolog 3; Belongs to the nanos family.	0.486
ENSCVAP00000003299	dazl	ENSCVAP00000003299	ENSCVAP00000007870	Uncharacterized protein.	Deleted in azoospermia-like.	0.517
ENSCVAP00000005537	dazl	ENSCVAP00000005537	ENSCVAP00000007870	Nanos homolog 2; Belongs to the nanos family.	Deleted in azoospermia-like.	0.611
ENSCVAP00000005537	piwil2	ENSCVAP00000005537	ENSCVAP00000019527	Nanos homolog 2; Belongs to the nanos family.	Piwi-like RNA-mediated gene silencing 2; Belongs to the argonaute family.	0.546
ENSCVAP00000005537	spo11	ENSCVAP00000005537	ENSCVAP00000010409	Nanos homolog 2; Belongs to the nanos family.	SPO11 initiator of meiotic double stranded breaks.	0.503
ENSCVAP00000009943	ENSCVAP00000003299	ENSCVAP00000009943	ENSCVAP00000003299	Nanos homolog 3; Belongs to the nanos family.	Uncharacterized protein.	0.486
ENSCVAP00000009943	ENSCVAP00000028334	ENSCVAP00000009943	ENSCVAP00000028334	Nanos homolog 3; Belongs to the nanos family.	Luteinizing hormone, beta polypeptide.	0.410
ENSCVAP00000009943	LOC107099037	ENSCVAP00000009943	ENSCVAP00000007299	Nanos homolog 3; Belongs to the nanos family.	Tudor domain containing 7 b.	0.416