(21 nodes) Beta-tubulin binding network (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	casc1	Cancer susceptibility candidate 1. (581 aa)
	LOC107097277	Uncharacterized protein. (628 aa)
	ttll7	Tubulin tyrosine ligase-like family, member 7. (925 aa)
	bbs4	Bardet-Biedl syndrome 4. (492 aa)
	cct5	Chaperonin containing TCP1, subunit 5 (epsilon). (541 aa)
	racgap1	Rac GTPase activating protein 1. (629 aa)
	adnp	Activity-dependent neuroprotector homeobox b. (1029 aa)
	htt	Huntingtin. (2595 aa)
	ENSCVAP00000016025	Si:ch1073-416j23.1. (477 aa)
	ENSCVAP00000016658	BCAS3 microtubule associated cell migration factor. (344 aa)
	ift74	Intraflagellar transport 74. (519 aa)
	ENSCVAP00000018990	Uncharacterized protein. (1100 aa)
	tbcd	Tubulin folding cofactor D. (1198 aa)
	lrpprc	Leucine-rich pentatricopeptide repeat containing. (1421 aa)
	tbca	Tubulin-specific chaperone A; Belongs to the TBCA family. (108 aa)
	ENSCVAP00000028514	PARK2 co-regulated. (103 aa)
	spast	Spastin; Belongs to the AAA ATPase family. (474 aa)
	uxt	Ubiquitously-expressed, prefoldin-like chaperone. (146 aa)
	pex14	Peroxisomal biogenesis factor 14. (372 aa)
	ENSCVAP00000030809	Uncharacterized protein. (267 aa)
	smc3	Structural maintenance of chromosomes protein. (1216 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000016658	ENSCVAP00000030809	ENSCVAP00000016658	ENSCVAP00000030809	BCAS3 microtubule associated cell migration factor.	Uncharacterized protein.	0.942
ENSCVAP00000030809	ENSCVAP00000016658	ENSCVAP00000030809	ENSCVAP00000016658	Uncharacterized protein.	BCAS3 microtubule associated cell migration factor.	0.942
bbs4	ift74	ENSCVAP00000004071	ENSCVAP00000017232	Bardet-Biedl syndrome 4.	Intraflagellar transport 74.	0.668
ift74	bbs4	ENSCVAP00000017232	ENSCVAP00000004071	Intraflagellar transport 74.	Bardet-Biedl syndrome 4.	0.668
ift74	tbcd	ENSCVAP00000017232	ENSCVAP00000024654	Intraflagellar transport 74.	Tubulin folding cofactor D.	0.412
lrpprc	uxt	ENSCVAP00000026988	ENSCVAP00000028558	Leucine-rich pentatricopeptide repeat containing.	Ubiquitously-expressed, prefoldin-like chaperone.	0.407
pex14	spast	ENSCVAP00000029042	ENSCVAP00000028557	Peroxisomal biogenesis factor 14.	Spastin; Belongs to the AAA ATPase family.	0.529
spast	pex14	ENSCVAP00000028557	ENSCVAP00000029042	Spastin; Belongs to the AAA ATPase family.	Peroxisomal biogenesis factor 14.	0.529
tbca	tbcd	ENSCVAP00000027161	ENSCVAP00000024654	Tubulin-specific chaperone A; Belongs to the TBCA family.	Tubulin folding cofactor D.	0.742
tbcd	ift74	ENSCVAP00000024654	ENSCVAP00000017232	Tubulin folding cofactor D.	Intraflagellar transport 74.	0.412
tbcd	tbca	ENSCVAP00000024654	ENSCVAP00000027161	Tubulin folding cofactor D.	Tubulin-specific chaperone A; Belongs to the TBCA family.	0.742
uxt	lrpprc	ENSCVAP00000028558	ENSCVAP00000026988	Ubiquitously-expressed, prefoldin-like chaperone.	Leucine-rich pentatricopeptide repeat containing.	0.407