(11 nodes) Histone H3-K9 methylation network (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ehmt1	Euchromatic histone-lysine N-methyltransferase 1b. (1279 aa)
	LOC107098659	Euchromatic histone-lysine N-methyltransferase 1a. (770 aa)
	LOC107099179	Uncharacterized protein. (587 aa)
	Arid4a	Tudor domain-containing protein. (327 aa)
	setdb1	SET domain bifurcated histone lysine methyltransferase 1b. (1250 aa)
	prdm5	Zinc finger protein. (611 aa)
	bend3	BEN domain containing 3. (801 aa)
	ENSCVAP00000013077	SET domain-containing protein. (176 aa)
	suv39h1	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily. (405 aa)
	arid4b	Translocase of outer mitochondrial membrane 20. (1290 aa)
	ehmt2	Euchromatic histone-lysine N-methyltransferase 2. (1130 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Arid4a	arid4b	ENSCVAP00000024072	ENSCVAP00000002162	Tudor domain-containing protein.	Translocase of outer mitochondrial membrane 20.	0.615
ENSCVAP00000013077	LOC107098659	ENSCVAP00000013077	ENSCVAP00000018720	SET domain-containing protein.	Euchromatic histone-lysine N-methyltransferase 1a.	0.895
LOC107098659	ENSCVAP00000013077	ENSCVAP00000018720	ENSCVAP00000013077	Euchromatic histone-lysine N-methyltransferase 1a.	SET domain-containing protein.	0.895
LOC107099179	suv39h1	ENSCVAP00000021816	ENSCVAP00000009576	Uncharacterized protein.	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.	0.464
arid4b	Arid4a	ENSCVAP00000002162	ENSCVAP00000024072	Translocase of outer mitochondrial membrane 20.	Tudor domain-containing protein.	0.615
setdb1	suv39h1	ENSCVAP00000024657	ENSCVAP00000009576	SET domain bifurcated histone lysine methyltransferase 1b.	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.	0.464
suv39h1	LOC107099179	ENSCVAP00000009576	ENSCVAP00000021816	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.	Uncharacterized protein.	0.464
suv39h1	setdb1	ENSCVAP00000009576	ENSCVAP00000024657	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.	SET domain bifurcated histone lysine methyltransferase 1b.	0.464