(7 nodes) Cardiac myofibril assembly network (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	adprhl1	ADP-ribosylhydrolase like 1. (358 aa)
	csrp3	Cysteine and glycine-rich protein 3 (cardiac LIM protein). (221 aa)
	srf	MADS-box domain-containing protein. (596 aa)
	neb	Nebulin. (5721 aa)
	Nrap	LIM zinc-binding domain-containing protein. (104 aa)
	LOC107082632	MADS-box domain-containing protein. (489 aa)
	tcap	Titin-cap (telethonin). (179 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107082632	srf	ENSCVAP00000023494	ENSCVAP00000015112	MADS-box domain-containing protein.	MADS-box domain-containing protein.	0.902
Nrap	csrp3	ENSCVAP00000017941	ENSCVAP00000003707	LIM zinc-binding domain-containing protein.	Cysteine and glycine-rich protein 3 (cardiac LIM protein).	0.613
Nrap	neb	ENSCVAP00000017941	ENSCVAP00000017392	LIM zinc-binding domain-containing protein.	Nebulin.	0.461
Nrap	tcap	ENSCVAP00000017941	ENSCVAP00000026486	LIM zinc-binding domain-containing protein.	Titin-cap (telethonin).	0.511
csrp3	Nrap	ENSCVAP00000003707	ENSCVAP00000017941	Cysteine and glycine-rich protein 3 (cardiac LIM protein).	LIM zinc-binding domain-containing protein.	0.613
csrp3	neb	ENSCVAP00000003707	ENSCVAP00000017392	Cysteine and glycine-rich protein 3 (cardiac LIM protein).	Nebulin.	0.449
csrp3	tcap	ENSCVAP00000003707	ENSCVAP00000026486	Cysteine and glycine-rich protein 3 (cardiac LIM protein).	Titin-cap (telethonin).	0.693
neb	Nrap	ENSCVAP00000017392	ENSCVAP00000017941	Nebulin.	LIM zinc-binding domain-containing protein.	0.461
neb	csrp3	ENSCVAP00000017392	ENSCVAP00000003707	Nebulin.	Cysteine and glycine-rich protein 3 (cardiac LIM protein).	0.449
neb	tcap	ENSCVAP00000017392	ENSCVAP00000026486	Nebulin.	Titin-cap (telethonin).	0.573
srf	LOC107082632	ENSCVAP00000015112	ENSCVAP00000023494	MADS-box domain-containing protein.	MADS-box domain-containing protein.	0.902
tcap	Nrap	ENSCVAP00000026486	ENSCVAP00000017941	Titin-cap (telethonin).	LIM zinc-binding domain-containing protein.	0.511
tcap	csrp3	ENSCVAP00000026486	ENSCVAP00000003707	Titin-cap (telethonin).	Cysteine and glycine-rich protein 3 (cardiac LIM protein).	0.693
tcap	neb	ENSCVAP00000026486	ENSCVAP00000017392	Titin-cap (telethonin).	Nebulin.	0.573