STRINGSTRING
lin28b lin28b ripk1 ripk1 LOC107101468 LOC107101468 trub1 trub1 dazl dazl LOC107102484 LOC107102484 fmr1 fmr1 LOC107091963 LOC107091963 LOC107093008 LOC107093008 LOC107102670 LOC107102670 ncor2 ncor2 LIMD1 LIMD1 ENSCVAP00000017074 ENSCVAP00000017074 zc3h10 zc3h10 pum2 pum2 pum1 pum1 dhx9 dhx9 ENSCVAP00000002779 ENSCVAP00000002779 dnd1 dnd1 Ncor1 Ncor1 trim71 trim71 zmpste24 zmpste24 wtip wtip bcdin3d bcdin3d LOC107084711 LOC107084711
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
lin28bLin-28 homolog B (C. elegans). (234 aa)
ripk1Receptor (TNFRSF)-interacting serine-threonine kinase 1, like. (627 aa)
LOC107101468Ajuba LIM protein. (704 aa)
trub1TruB pseudouridine (psi) synthase family member 1. (326 aa)
dazlDeleted in azoospermia-like. (201 aa)
LOC107102484LIM domain-containing protein ajuba-like. (121 aa)
fmr1Fragile X mental retardation 1. (549 aa)
LOC107091963ELAV-like protein; Belongs to the RRM elav family. (364 aa)
LOC107093008ELAV-like protein; Belongs to the RRM elav family. (344 aa)
LOC107102670Si:dkey-206d17.12. (600 aa)
ncor2Nuclear receptor corepressor 2. (2268 aa)
LIMD1LIM domains containing 1. (540 aa)
ENSCVAP00000017074TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family. (64 aa)
zc3h10Zinc finger CCCH-type containing 10. (546 aa)
pum2Pumilio RNA-binding family member 2. (1292 aa)
pum1Pumilio RNA-binding family member 1. (1163 aa)
dhx9DEAH (Asp-Glu-Ala-His) box helicase 9. (1216 aa)
ENSCVAP00000002779GPS2_interact domain-containing protein. (204 aa)
dnd1RRM domain-containing protein. (414 aa)
Ncor1Uncharacterized protein. (946 aa)
trim71Tripartite motif containing 71, E3 ubiquitin protein ligase. (836 aa)
zmpste24CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family. (467 aa)
wtipWT1 interacting protein. (706 aa)
bcdin3dBCDIN3 domain containing. (252 aa)
LOC107084711Zinc finger CCCH-type containing 12A. (619 aa)
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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