(28 nodes) Protein K63-linked deubiquitination network (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	spata2	Spermatogenesis associated 2. (564 aa)
	LOC107093312	Cylindromatosis (turban tumor syndrome), like. (459 aa)
	LOC107093889	Cylindromatosis (turban tumor syndrome), b. (733 aa)
	ENSCVAP00000008191	Reverse transcriptase domain-containing protein. (509 aa)
	otud5	OTU deubiquitinase 5a. (539 aa)
	psmd14	Proteasome 26S subunit, non-ATPase 14. (310 aa)
	otud4	OTU domain-containing protein. (880 aa)
	tnfaip3	Tumor necrosis factor, alpha-induced protein 3. (822 aa)
	stambp	STAM binding protein b. (435 aa)
	abraxas2	Abraxas 2, BRISC complex subunit. (453 aa)
	LOC107091355	Zinc finger, RAN-binding domain containing 1b. (757 aa)
	cyld	Cylindromatosis (turban tumor syndrome), a; Belongs to the peptidase C19 family. (949 aa)
	otud7b	OTU deubiquitinase 7B. (916 aa)
	otud7a	OTU deubiquitinase 7A. (958 aa)
	babam1	BRISC and BRCA1 A complex member 1. (380 aa)
	usp7	Ubiquitin specific peptidase 7 (herpes virus-associated); Belongs to the peptidase C19 family. (1182 aa)
	otud1	OTU deubiquitinase 1. (366 aa)
	usp13	Ubiquitin carboxyl-terminal hydrolase. (863 aa)
	ENSCVAP00000024906	USP domain-containing protein; Belongs to the peptidase C19 family. (109 aa)
	ENSCVAP00000024911	USP domain-containing protein. (422 aa)
	usp8	Ubiquitin specific peptidase 8; Belongs to the peptidase C19 family. (1010 aa)
	usp33	Ubiquitin carboxyl-terminal hydrolase. (915 aa)
	uimc1	Uncharacterized protein. (990 aa)
	LOC107091977	Uncharacterized protein. (967 aa)
	stambpl1	STAM binding protein-like 1. (437 aa)
	yod1	YOD1 deubiquitinase. (300 aa)
	zranb1	Uncharacterized protein. (707 aa)
	usp20	Ubiquitin carboxyl-terminal hydrolase. (887 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000008191	abraxas2	ENSCVAP00000008191	ENSCVAP00000016538	Reverse transcriptase domain-containing protein.	Abraxas 2, BRISC complex subunit.	0.451
ENSCVAP00000008191	babam1	ENSCVAP00000008191	ENSCVAP00000018674	Reverse transcriptase domain-containing protein.	BRISC and BRCA1 A complex member 1.	0.974
ENSCVAP00000008191	psmd14	ENSCVAP00000008191	ENSCVAP00000012226	Reverse transcriptase domain-containing protein.	Proteasome 26S subunit, non-ATPase 14.	0.450
ENSCVAP00000024906	ENSCVAP00000024911	ENSCVAP00000024906	ENSCVAP00000024911	USP domain-containing protein; Belongs to the peptidase C19 family.	USP domain-containing protein.	0.810
ENSCVAP00000024911	ENSCVAP00000024906	ENSCVAP00000024911	ENSCVAP00000024906	USP domain-containing protein.	USP domain-containing protein; Belongs to the peptidase C19 family.	0.810
LOC107091355	otud7a	ENSCVAP00000016583	ENSCVAP00000018174	Zinc finger, RAN-binding domain containing 1b.	OTU deubiquitinase 7A.	0.403
LOC107091355	otud7b	ENSCVAP00000016583	ENSCVAP00000017653	Zinc finger, RAN-binding domain containing 1b.	OTU deubiquitinase 7B.	0.403
LOC107091355	tnfaip3	ENSCVAP00000016583	ENSCVAP00000014276	Zinc finger, RAN-binding domain containing 1b.	Tumor necrosis factor, alpha-induced protein 3.	0.468
LOC107091977	LOC107093889	ENSCVAP00000028547	ENSCVAP00000007972	Uncharacterized protein.	Cylindromatosis (turban tumor syndrome), b.	0.907
LOC107091977	cyld	ENSCVAP00000028547	ENSCVAP00000017451	Uncharacterized protein.	Cylindromatosis (turban tumor syndrome), a; Belongs to the peptidase C19 family.	0.905
LOC107091977	spata2	ENSCVAP00000028547	ENSCVAP00000008522	Uncharacterized protein.	Spermatogenesis associated 2.	0.951
LOC107093312	spata2	ENSCVAP00000000157	ENSCVAP00000008522	Cylindromatosis (turban tumor syndrome), like.	Spermatogenesis associated 2.	0.563
LOC107093889	LOC107091977	ENSCVAP00000007972	ENSCVAP00000028547	Cylindromatosis (turban tumor syndrome), b.	Uncharacterized protein.	0.907
LOC107093889	cyld	ENSCVAP00000007972	ENSCVAP00000017451	Cylindromatosis (turban tumor syndrome), b.	Cylindromatosis (turban tumor syndrome), a; Belongs to the peptidase C19 family.	0.906
LOC107093889	spata2	ENSCVAP00000007972	ENSCVAP00000008522	Cylindromatosis (turban tumor syndrome), b.	Spermatogenesis associated 2.	0.954
abraxas2	ENSCVAP00000008191	ENSCVAP00000016538	ENSCVAP00000008191	Abraxas 2, BRISC complex subunit.	Reverse transcriptase domain-containing protein.	0.451
abraxas2	babam1	ENSCVAP00000016538	ENSCVAP00000018674	Abraxas 2, BRISC complex subunit.	BRISC and BRCA1 A complex member 1.	0.986
abraxas2	uimc1	ENSCVAP00000016538	ENSCVAP00000028059	Abraxas 2, BRISC complex subunit.	Uncharacterized protein.	0.451
abraxas2	usp7	ENSCVAP00000016538	ENSCVAP00000019034	Abraxas 2, BRISC complex subunit.	Ubiquitin specific peptidase 7 (herpes virus-associated); Belongs to the peptidase C19 family.	0.479
babam1	ENSCVAP00000008191	ENSCVAP00000018674	ENSCVAP00000008191	BRISC and BRCA1 A complex member 1.	Reverse transcriptase domain-containing protein.	0.974