49 items (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	snrpd1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
	prpf3	PRP3 pre-mRNA processing factor 3 homolog (yeast). (695 aa)
	cwc22	CWC22 spliceosome associated protein homolog. (1010 aa)
	ENSCVAP00000025291	Uncharacterized protein. (465 aa)
	sf3a3	Splicing factor 3a, subunit 3. (494 aa)
	sf3b3	Splicing factor 3b, subunit 3. (1217 aa)
	prpf6	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (969 aa)
	LOC107081054	Small nuclear ribonucleoprotein Sm D2. (118 aa)
	lsm2	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (106 aa)
	ENSCVAP00000029121	WD_REPEATS_REGION domain-containing protein. (174 aa)
	SMU1	SMU1 DNA replication regulator and spliceosomal factor. (513 aa)
	snu13	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
	snrpa1	Small nuclear ribonucleoprotein polypeptide A. (250 aa)
	ENSCVAP00000031045	Uncharacterized protein. (115 aa)
	snrpe	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
	sf3a2	Splicing factor 3a, subunit 2. (294 aa)
	mfap1	Microfibril associated protein 1. (408 aa)
	sf3a1	Splicing factor 3a, subunit 1. (784 aa)
	dhx16	DEAH (Asp-Glu-Ala-His) box polypeptide 16. (902 aa)
	prpf31	PRP31 pre-mRNA processing factor 31 homolog (yeast). (508 aa)
	sf3b1	Splicing factor 3b, subunit 1. (1268 aa)
	SART1	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (771 aa)
	SNRPD2	Small nuclear ribonucleoprotein Sm D2. (121 aa)
	lsm4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (143 aa)
	rnf113a	Ring finger protein 113A. (321 aa)
	smu1	SMU1 DNA replication regulator and spliceosomal factor b. (507 aa)
	prpf38a	Pre-mRNA processing factor 38A. (309 aa)
	eftud2	Elongation factor Tu GTP binding domain containing 2. (1003 aa)
	SNRPN	Small nuclear ribonucleoprotein-associated protein. (241 aa)
	Snrpf	Small nuclear ribonucleoprotein polypeptide F. (126 aa)
	snrnp200	Small nuclear ribonucleoprotein 200 (U5). (2056 aa)
	cwc27	CWC27 spliceosome associated cyclophilin. (479 aa)
	snip1	Smad nuclear interacting protein. (363 aa)
	lsm8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
	lsm7	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (108 aa)
	wbp4	Uncharacterized protein. (400 aa)
	LOC107098670	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (131 aa)
	Prpf4	WD_REPEATS_REGION domain-containing protein. (123 aa)
	lsm6	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (80 aa)
	bud13	BUD13 homolog. (517 aa)
	sf3b2	Splicing factor 3b, subunit 2. (848 aa)
	zmat2	Zinc finger, matrin-type 2. (201 aa)
	lsm5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
	sf3b5	Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
	sf3b4	Splicing factor 3b, subunit 4. (389 aa)
	phf5a	PHD finger protein 5A. (110 aa)
	lsm3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
	txnl4a	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
	snrpd3	Small nuclear ribonucleoprotein Sm D3. (127 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000025291	ENSCVAP00000029121	ENSCVAP00000025291	ENSCVAP00000029121	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.920
ENSCVAP00000025291	ENSCVAP00000031045	ENSCVAP00000025291	ENSCVAP00000031045	Uncharacterized protein.	Uncharacterized protein.	0.753
ENSCVAP00000025291	LOC107081054	ENSCVAP00000025291	ENSCVAP00000028040	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D2.	0.925
ENSCVAP00000025291	LOC107098670	ENSCVAP00000025291	ENSCVAP00000018552	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.753
ENSCVAP00000025291	Prpf4	ENSCVAP00000025291	ENSCVAP00000018985	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.920
ENSCVAP00000025291	SART1	ENSCVAP00000025291	ENSCVAP00000008057	Uncharacterized protein.	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	0.971
ENSCVAP00000025291	SMU1	ENSCVAP00000025291	ENSCVAP00000030086	Uncharacterized protein.	SMU1 DNA replication regulator and spliceosomal factor.	0.834
ENSCVAP00000025291	SNRPD2	ENSCVAP00000025291	ENSCVAP00000008404	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D2.	0.925
ENSCVAP00000025291	SNRPN	ENSCVAP00000025291	ENSCVAP00000011861	Uncharacterized protein.	Small nuclear ribonucleoprotein-associated protein.	0.944
ENSCVAP00000025291	Snrpf	ENSCVAP00000025291	ENSCVAP00000013124	Uncharacterized protein.	Small nuclear ribonucleoprotein polypeptide F.	0.968
ENSCVAP00000025291	bud13	ENSCVAP00000025291	ENSCVAP00000020946	Uncharacterized protein.	BUD13 homolog.	0.903
ENSCVAP00000025291	cwc22	ENSCVAP00000025291	ENSCVAP00000025219	Uncharacterized protein.	CWC22 spliceosome associated protein homolog.	0.908
ENSCVAP00000025291	cwc27	ENSCVAP00000025291	ENSCVAP00000014863	Uncharacterized protein.	CWC27 spliceosome associated cyclophilin.	0.893
ENSCVAP00000025291	dhx16	ENSCVAP00000025291	ENSCVAP00000005572	Uncharacterized protein.	DEAH (Asp-Glu-Ala-His) box polypeptide 16.	0.912
ENSCVAP00000025291	eftud2	ENSCVAP00000025291	ENSCVAP00000010358	Uncharacterized protein.	Elongation factor Tu GTP binding domain containing 2.	0.998
ENSCVAP00000025291	lsm2	ENSCVAP00000025291	ENSCVAP00000028389	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.925
ENSCVAP00000025291	lsm3	ENSCVAP00000025291	ENSCVAP00000023525	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.863
ENSCVAP00000025291	lsm4	ENSCVAP00000025291	ENSCVAP00000008739	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.753
ENSCVAP00000025291	lsm5	ENSCVAP00000025291	ENSCVAP00000021916	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.910
ENSCVAP00000025291	lsm6	ENSCVAP00000025291	ENSCVAP00000020337	Uncharacterized protein.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.917