12 items (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	snrnp200	Small nuclear ribonucleoprotein 200 (U5). (2056 aa)
	casc3	Casc3 exon junction complex subunit. (736 aa)
	ENSCVAP00000025291	Uncharacterized protein. (465 aa)
	cwc22	CWC22 spliceosome associated protein homolog. (1010 aa)
	eif4a3	Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (406 aa)
	rbm8a	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (173 aa)
	LOC107103552	ISY1 splicing factor homolog. (280 aa)
	yju2	YJU2 splicing factor homolog. (338 aa)
	prpf19	Pre-mRNA processing factor 19. (505 aa)
	rbm22	RNA binding motif protein 22. (427 aa)
	cwc25	CWC25 spliceosome associated protein homolog. (398 aa)
	LOC107100820	Src homology 2 domain containing transforming protein D, a. (437 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000025291	LOC107100820	ENSCVAP00000025291	ENSCVAP00000005697	Uncharacterized protein.	Src homology 2 domain containing transforming protein D, a.	0.757
ENSCVAP00000025291	LOC107103552	ENSCVAP00000025291	ENSCVAP00000011992	Uncharacterized protein.	ISY1 splicing factor homolog.	0.928
ENSCVAP00000025291	casc3	ENSCVAP00000025291	ENSCVAP00000028105	Uncharacterized protein.	Casc3 exon junction complex subunit.	0.575
ENSCVAP00000025291	cwc22	ENSCVAP00000025291	ENSCVAP00000025219	Uncharacterized protein.	CWC22 spliceosome associated protein homolog.	0.908
ENSCVAP00000025291	cwc25	ENSCVAP00000025291	ENSCVAP00000006306	Uncharacterized protein.	CWC25 spliceosome associated protein homolog.	0.898
ENSCVAP00000025291	eif4a3	ENSCVAP00000025291	ENSCVAP00000023480	Uncharacterized protein.	Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.	0.941
ENSCVAP00000025291	prpf19	ENSCVAP00000025291	ENSCVAP00000009933	Uncharacterized protein.	Pre-mRNA processing factor 19.	0.985
ENSCVAP00000025291	rbm22	ENSCVAP00000025291	ENSCVAP00000008787	Uncharacterized protein.	RNA binding motif protein 22.	0.907
ENSCVAP00000025291	rbm8a	ENSCVAP00000025291	ENSCVAP00000017618	Uncharacterized protein.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.749
ENSCVAP00000025291	snrnp200	ENSCVAP00000025291	ENSCVAP00000014832	Uncharacterized protein.	Small nuclear ribonucleoprotein 200 (U5).	0.999
ENSCVAP00000025291	yju2	ENSCVAP00000025291	ENSCVAP00000011327	Uncharacterized protein.	YJU2 splicing factor homolog.	0.883
LOC107100820	ENSCVAP00000025291	ENSCVAP00000005697	ENSCVAP00000025291	Src homology 2 domain containing transforming protein D, a.	Uncharacterized protein.	0.757
LOC107100820	LOC107103552	ENSCVAP00000005697	ENSCVAP00000011992	Src homology 2 domain containing transforming protein D, a.	ISY1 splicing factor homolog.	0.926
LOC107100820	casc3	ENSCVAP00000005697	ENSCVAP00000028105	Src homology 2 domain containing transforming protein D, a.	Casc3 exon junction complex subunit.	0.501
LOC107100820	cwc22	ENSCVAP00000005697	ENSCVAP00000025219	Src homology 2 domain containing transforming protein D, a.	CWC22 spliceosome associated protein homolog.	0.972
LOC107100820	cwc25	ENSCVAP00000005697	ENSCVAP00000006306	Src homology 2 domain containing transforming protein D, a.	CWC25 spliceosome associated protein homolog.	0.991
LOC107100820	eif4a3	ENSCVAP00000005697	ENSCVAP00000023480	Src homology 2 domain containing transforming protein D, a.	Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.	0.643
LOC107100820	prpf19	ENSCVAP00000005697	ENSCVAP00000009933	Src homology 2 domain containing transforming protein D, a.	Pre-mRNA processing factor 19.	0.883
LOC107100820	rbm22	ENSCVAP00000005697	ENSCVAP00000008787	Src homology 2 domain containing transforming protein D, a.	RNA binding motif protein 22.	0.628
LOC107100820	rbm8a	ENSCVAP00000005697	ENSCVAP00000017618	Src homology 2 domain containing transforming protein D, a.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.501