27 items (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SNRPN	Small nuclear ribonucleoprotein-associated protein. (241 aa)
	cwc15	CWC15 spliceosome associated protein homolog. (238 aa)
	Snrpf	Small nuclear ribonucleoprotein polypeptide F. (126 aa)
	prpf19	Pre-mRNA processing factor 19. (505 aa)
	rbm22	RNA binding motif protein 22. (427 aa)
	SNRPD2	Small nuclear ribonucleoprotein Sm D2. (121 aa)
	ppil1	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (166 aa)
	snrpd3	Small nuclear ribonucleoprotein Sm D3. (127 aa)
	snrnp40	Small nuclear ribonucleoprotein 40 (U5). (347 aa)
	dhx8	DEAH (Asp-Glu-Ala-His) box polypeptide 8. (1230 aa)
	aqr	Aquarius intron-binding spliceosomal factor. (1469 aa)
	dhx34	DEAH (Asp-Glu-Ala-His) box polypeptide 34. (1148 aa)
	bcas2	BCAS2 pre-mRNA processing factor. (225 aa)
	snrpe	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
	syf2	SYF2 pre-mRNA-splicing factor. (239 aa)
	ppie	Peptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (301 aa)
	snrpa1	Small nuclear ribonucleoprotein polypeptide A. (250 aa)
	crnkl1	Crooked neck pre-mRNA splicing factor 1. (743 aa)
	snrpd1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
	LOC107081054	Small nuclear ribonucleoprotein Sm D2. (118 aa)
	cdc40	Cell division cycle 40 homolog (S. cerevisiae). (581 aa)
	cwc22	CWC22 spliceosome associated protein homolog. (1010 aa)
	ENSCVAP00000025291	Uncharacterized protein. (465 aa)
	snw1	SNW domain containing 1. (498 aa)
	eftud2	Elongation factor Tu GTP binding domain containing 2. (1003 aa)
	xab2	XPA binding protein 2. (849 aa)
	plrg1	Pleiotropic regulator 1. (512 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000025291	LOC107081054	ENSCVAP00000025291	ENSCVAP00000028040	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D2.	0.925
ENSCVAP00000025291	SNRPD2	ENSCVAP00000025291	ENSCVAP00000008404	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D2.	0.925
ENSCVAP00000025291	SNRPN	ENSCVAP00000025291	ENSCVAP00000011861	Uncharacterized protein.	Small nuclear ribonucleoprotein-associated protein.	0.944
ENSCVAP00000025291	Snrpf	ENSCVAP00000025291	ENSCVAP00000013124	Uncharacterized protein.	Small nuclear ribonucleoprotein polypeptide F.	0.968
ENSCVAP00000025291	aqr	ENSCVAP00000025291	ENSCVAP00000002296	Uncharacterized protein.	Aquarius intron-binding spliceosomal factor.	0.911
ENSCVAP00000025291	bcas2	ENSCVAP00000025291	ENSCVAP00000001016	Uncharacterized protein.	BCAS2 pre-mRNA processing factor.	0.978
ENSCVAP00000025291	cdc40	ENSCVAP00000025291	ENSCVAP00000023907	Uncharacterized protein.	Cell division cycle 40 homolog (S. cerevisiae).	0.923
ENSCVAP00000025291	crnkl1	ENSCVAP00000025291	ENSCVAP00000028240	Uncharacterized protein.	Crooked neck pre-mRNA splicing factor 1.	0.930
ENSCVAP00000025291	cwc15	ENSCVAP00000025291	ENSCVAP00000012029	Uncharacterized protein.	CWC15 spliceosome associated protein homolog.	0.915
ENSCVAP00000025291	cwc22	ENSCVAP00000025291	ENSCVAP00000025219	Uncharacterized protein.	CWC22 spliceosome associated protein homolog.	0.908
ENSCVAP00000025291	dhx34	ENSCVAP00000025291	ENSCVAP00000001421	Uncharacterized protein.	DEAH (Asp-Glu-Ala-His) box polypeptide 34.	0.667
ENSCVAP00000025291	dhx8	ENSCVAP00000025291	ENSCVAP00000004836	Uncharacterized protein.	DEAH (Asp-Glu-Ala-His) box polypeptide 8.	0.667
ENSCVAP00000025291	eftud2	ENSCVAP00000025291	ENSCVAP00000010358	Uncharacterized protein.	Elongation factor Tu GTP binding domain containing 2.	0.998
ENSCVAP00000025291	plrg1	ENSCVAP00000025291	ENSCVAP00000010600	Uncharacterized protein.	Pleiotropic regulator 1.	0.923
ENSCVAP00000025291	ppie	ENSCVAP00000025291	ENSCVAP00000030591	Uncharacterized protein.	Peptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily.	0.672
ENSCVAP00000025291	ppil1	ENSCVAP00000025291	ENSCVAP00000008351	Uncharacterized protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.876
ENSCVAP00000025291	prpf19	ENSCVAP00000025291	ENSCVAP00000009933	Uncharacterized protein.	Pre-mRNA processing factor 19.	0.985
ENSCVAP00000025291	rbm22	ENSCVAP00000025291	ENSCVAP00000008787	Uncharacterized protein.	RNA binding motif protein 22.	0.907
ENSCVAP00000025291	snrnp40	ENSCVAP00000025291	ENSCVAP00000005660	Uncharacterized protein.	Small nuclear ribonucleoprotein 40 (U5).	0.998
ENSCVAP00000025291	snrpa1	ENSCVAP00000025291	ENSCVAP00000030275	Uncharacterized protein.	Small nuclear ribonucleoprotein polypeptide A.	0.915