67 items (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Prpf8	MPN domain-containing protein. (322 aa)
	sf3a3	Splicing factor 3a, subunit 3. (494 aa)
	prpf6	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (969 aa)
	LOC107104328	Synaptotagmin binding, cytoplasmic RNA interacting protein. (632 aa)
	LOC107081054	Small nuclear ribonucleoprotein Sm D2. (118 aa)
	crnkl1	Crooked neck pre-mRNA splicing factor 1. (743 aa)
	lsm2	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (106 aa)
	WDR25	WD repeat domain 25. (503 aa)
	ppwd1	Peptidylprolyl isomerase domain and WD repeat containing 1. (630 aa)
	ppil2	Peptidylprolyl isomerase (cyclophilin)-like 2. (525 aa)
	ENSCVAP00000030023	annotation not available (241 aa)
	snrpa1	Small nuclear ribonucleoprotein polypeptide A. (250 aa)
	ppie	Peptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (301 aa)
	syf2	SYF2 pre-mRNA-splicing factor. (239 aa)
	snrpe	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
	sf3a2	Splicing factor 3a, subunit 2. (294 aa)
	hnrnpr	Heterogeneous nuclear ribonucleoprotein R. (631 aa)
	Srrm1	PWI domain-containing protein. (237 aa)
	syncrip	Synaptotagmin binding, cytoplasmic RNA interacting protein, like. (542 aa)
	snrpd1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
	sf3a1	Splicing factor 3a, subunit 1. (784 aa)
	mtrex	Mtr4 exosome RNA helicase. (1036 aa)
	sf3b1	Splicing factor 3b, subunit 1. (1268 aa)
	aqr	Aquarius intron-binding spliceosomal factor. (1469 aa)
	PNN	Pinin, desmosome associated protein. (666 aa)
	dhx34	DEAH (Asp-Glu-Ala-His) box polypeptide 34. (1148 aa)
	gpatch1	G patch domain containing 1. (780 aa)
	cwc27	CWC27 spliceosome associated cyclophilin. (479 aa)
	snrnp200	Small nuclear ribonucleoprotein 200 (U5). (2056 aa)
	ddx23	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23. (802 aa)
	Snrpf	Small nuclear ribonucleoprotein polypeptide F. (126 aa)
	DDX41	DEAD-box helicase 41. (562 aa)
	cwc15	CWC15 spliceosome associated protein homolog. (238 aa)
	LOC107103552	ISY1 splicing factor homolog. (280 aa)
	SNRPN	Small nuclear ribonucleoprotein-associated protein. (241 aa)
	snrpg	Small nuclear ribonucleoprotein G. (76 aa)
	plrg1	Pleiotropic regulator 1. (512 aa)
	xab2	XPA binding protein 2. (849 aa)
	eftud2	Elongation factor Tu GTP binding domain containing 2. (1003 aa)
	wdr83	WD repeat domain containing 83. (317 aa)
	snw1	SNW domain containing 1. (498 aa)
	prpf19	Pre-mRNA processing factor 19. (505 aa)
	rbm22	RNA binding motif protein 22. (427 aa)
	ppil3	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (161 aa)
	dhx35	DEAH-box helicase 35. (699 aa)
	SNRPD2	Small nuclear ribonucleoprotein Sm D2. (121 aa)
	ppil1	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (166 aa)
	SART1	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (771 aa)
	rbmx	RNA binding motif protein X-linked. (385 aa)
	snrnp40	Small nuclear ribonucleoprotein 40 (U5). (347 aa)
	dhx8	DEAH (Asp-Glu-Ala-His) box polypeptide 8. (1230 aa)
	bcas2	BCAS2 pre-mRNA processing factor. (225 aa)
	snrpd3	Small nuclear ribonucleoprotein Sm D3. (127 aa)
	LOC107100983	Heterogeneous nuclear ribonucleoprotein M. (689 aa)
	lsm7	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (108 aa)
	ess2	Ess-2 splicing factor homolog. (475 aa)
	dhx38	DEAH (Asp-Glu-Ala-His) box polypeptide 38. (1254 aa)
	zcchc8	Zinc finger, CCHC domain containing 8. (699 aa)
	sf3b2	Splicing factor 3b, subunit 2. (848 aa)
	LOC107081919	Zgc:153119. (298 aa)
	sf3b6	Splicing factor 3b, subunit 6. (125 aa)
	lsm3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
	cdc40	Cell division cycle 40 homolog (S. cerevisiae). (581 aa)
	ENSCVAP00000024197	Uncharacterized protein. (298 aa)
	prpf4b	Pre-mRNA processing factor 4Bb. (1014 aa)
	cwc22	CWC22 spliceosome associated protein homolog. (1010 aa)
	ENSCVAP00000025291	Uncharacterized protein. (465 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX41	Srrm1	ENSCVAP00000012052	ENSCVAP00000016454	DEAD-box helicase 41.	PWI domain-containing protein.	0.672
DDX41	WDR25	ENSCVAP00000012052	ENSCVAP00000028546	DEAD-box helicase 41.	WD repeat domain 25.	0.632
DDX41	cdc40	ENSCVAP00000012052	ENSCVAP00000023907	DEAD-box helicase 41.	Cell division cycle 40 homolog (S. cerevisiae).	0.676
DDX41	cwc22	ENSCVAP00000012052	ENSCVAP00000025219	DEAD-box helicase 41.	CWC22 spliceosome associated protein homolog.	0.659
DDX41	cwc27	ENSCVAP00000012052	ENSCVAP00000014863	DEAD-box helicase 41.	CWC27 spliceosome associated cyclophilin.	0.410
DDX41	ddx23	ENSCVAP00000012052	ENSCVAP00000013230	DEAD-box helicase 41.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23.	0.499
DDX41	dhx34	ENSCVAP00000012052	ENSCVAP00000001421	DEAD-box helicase 41.	DEAH (Asp-Glu-Ala-His) box polypeptide 34.	0.668
DDX41	dhx35	ENSCVAP00000012052	ENSCVAP00000008456	DEAD-box helicase 41.	DEAH-box helicase 35.	0.668
DDX41	dhx38	ENSCVAP00000012052	ENSCVAP00000019699	DEAD-box helicase 41.	DEAH (Asp-Glu-Ala-His) box polypeptide 38.	0.743
DDX41	dhx8	ENSCVAP00000012052	ENSCVAP00000004836	DEAD-box helicase 41.	DEAH (Asp-Glu-Ala-His) box polypeptide 8.	0.668
DDX41	gpatch1	ENSCVAP00000012052	ENSCVAP00000001113	DEAD-box helicase 41.	G patch domain containing 1.	0.638
DDX41	mtrex	ENSCVAP00000012052	ENSCVAP00000003325	DEAD-box helicase 41.	Mtr4 exosome RNA helicase.	0.666
DDX41	ppie	ENSCVAP00000012052	ENSCVAP00000030591	DEAD-box helicase 41.	Peptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily.	0.549
DDX41	ppil1	ENSCVAP00000012052	ENSCVAP00000008351	DEAD-box helicase 41.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.689
DDX41	ppil2	ENSCVAP00000012052	ENSCVAP00000030010	DEAD-box helicase 41.	Peptidylprolyl isomerase (cyclophilin)-like 2.	0.518
DDX41	ppil3	ENSCVAP00000012052	ENSCVAP00000008586	DEAD-box helicase 41.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.658
DDX41	ppwd1	ENSCVAP00000012052	ENSCVAP00000029623	DEAD-box helicase 41.	Peptidylprolyl isomerase domain and WD repeat containing 1.	0.853
ENSCVAP00000024197	ENSCVAP00000025291	ENSCVAP00000024197	ENSCVAP00000025291	Uncharacterized protein.	Uncharacterized protein.	0.822
ENSCVAP00000024197	LOC107081054	ENSCVAP00000024197	ENSCVAP00000028040	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D2.	0.872
ENSCVAP00000024197	LOC107081919	ENSCVAP00000024197	ENSCVAP00000021790	Uncharacterized protein.	Zgc:153119.	0.693