12 items (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	tfip11	Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family. (835 aa)
	syf2	SYF2 pre-mRNA-splicing factor. (239 aa)
	crnkl1	Crooked neck pre-mRNA splicing factor 1. (743 aa)
	cwf19l2	CWF19 like cell cycle control factor 2. (921 aa)
	cwf19l1	CWF19 like cell cycle control factor 1. (512 aa)
	LOC107100983	Heterogeneous nuclear ribonucleoprotein M. (689 aa)
	LOC107103552	ISY1 splicing factor homolog. (280 aa)
	xab2	XPA binding protein 2. (849 aa)
	ccdc130	Coiled-coil domain containing 130. (399 aa)
	DHX15	DEAH-box helicase 15. (762 aa)
	ENSCVAP00000009384	Coiled-coil domain containing 12. (134 aa)
	ENSCVAP00000008897	Myelin expression factor 2. (303 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DHX15	ENSCVAP00000009384	ENSCVAP00000009649	ENSCVAP00000009384	DEAH-box helicase 15.	Coiled-coil domain containing 12.	0.433
DHX15	LOC107100983	ENSCVAP00000009649	ENSCVAP00000017708	DEAH-box helicase 15.	Heterogeneous nuclear ribonucleoprotein M.	0.589
DHX15	LOC107103552	ENSCVAP00000009649	ENSCVAP00000011992	DEAH-box helicase 15.	ISY1 splicing factor homolog.	0.471
DHX15	crnkl1	ENSCVAP00000009649	ENSCVAP00000028240	DEAH-box helicase 15.	Crooked neck pre-mRNA splicing factor 1.	0.956
DHX15	cwf19l2	ENSCVAP00000009649	ENSCVAP00000023547	DEAH-box helicase 15.	CWF19 like cell cycle control factor 2.	0.864
DHX15	syf2	ENSCVAP00000009649	ENSCVAP00000030757	DEAH-box helicase 15.	SYF2 pre-mRNA-splicing factor.	0.966
DHX15	tfip11	ENSCVAP00000009649	ENSCVAP00000026248	DEAH-box helicase 15.	Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family.	0.997
DHX15	xab2	ENSCVAP00000009649	ENSCVAP00000010458	DEAH-box helicase 15.	XPA binding protein 2.	0.962
ENSCVAP00000008897	xab2	ENSCVAP00000008897	ENSCVAP00000010458	Myelin expression factor 2.	XPA binding protein 2.	0.405
ENSCVAP00000009384	DHX15	ENSCVAP00000009384	ENSCVAP00000009649	Coiled-coil domain containing 12.	DEAH-box helicase 15.	0.433
ENSCVAP00000009384	LOC107103552	ENSCVAP00000009384	ENSCVAP00000011992	Coiled-coil domain containing 12.	ISY1 splicing factor homolog.	0.453
ENSCVAP00000009384	crnkl1	ENSCVAP00000009384	ENSCVAP00000028240	Coiled-coil domain containing 12.	Crooked neck pre-mRNA splicing factor 1.	0.951
ENSCVAP00000009384	cwf19l2	ENSCVAP00000009384	ENSCVAP00000023547	Coiled-coil domain containing 12.	CWF19 like cell cycle control factor 2.	0.712
ENSCVAP00000009384	syf2	ENSCVAP00000009384	ENSCVAP00000030757	Coiled-coil domain containing 12.	SYF2 pre-mRNA-splicing factor.	0.956
ENSCVAP00000009384	tfip11	ENSCVAP00000009384	ENSCVAP00000026248	Coiled-coil domain containing 12.	Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family.	0.576
LOC107100983	DHX15	ENSCVAP00000017708	ENSCVAP00000009649	Heterogeneous nuclear ribonucleoprotein M.	DEAH-box helicase 15.	0.589
LOC107103552	DHX15	ENSCVAP00000011992	ENSCVAP00000009649	ISY1 splicing factor homolog.	DEAH-box helicase 15.	0.471
LOC107103552	ENSCVAP00000009384	ENSCVAP00000011992	ENSCVAP00000009384	ISY1 splicing factor homolog.	Coiled-coil domain containing 12.	0.453
LOC107103552	crnkl1	ENSCVAP00000011992	ENSCVAP00000028240	ISY1 splicing factor homolog.	Crooked neck pre-mRNA splicing factor 1.	0.999
LOC107103552	syf2	ENSCVAP00000011992	ENSCVAP00000030757	ISY1 splicing factor homolog.	SYF2 pre-mRNA-splicing factor.	0.996