(22 nodes) Glycoprotein complex network (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107088178	Glycoprotein IX (platelet). (257 aa)
	SGCZ	Sarcoglycan zeta. (283 aa)
	sntb2	Syntrophin, beta 2. (448 aa)
	sntg1	Syntrophin, gamma 1. (509 aa)
	sgcb	Sarcoglycan, beta (dystrophin-associated glycoprotein). (310 aa)
	LOC107099701	Syntrophin, beta 2. (465 aa)
	sgcd	Sarcoglycan, delta (dystrophin-associated glycoprotein). (293 aa)
	sntg2	Syntrophin, gamma 2. (469 aa)
	LOC107102255	Dystroglycan 1. (905 aa)
	LOC107090395	Peptidase S72 domain-containing protein. (908 aa)
	ENSCVAP00000009864	Sarcoglycan, alpha. (369 aa)
	ENSCVAP00000008644	Si:ch211-237i5.4. (411 aa)
	ENSCVAP00000007137	Uncharacterized protein. (346 aa)
	ENSCVAP00000006314	PDZ domain-containing protein. (166 aa)
	SNTA1	Syntrophin alpha 1. (487 aa)
	ENSCVAP00000027785	Uncharacterized protein. (78 aa)
	sgce	Sarcoglycan, epsilon. (475 aa)
	gp1bb	Glycoprotein Ib platelet subunit beta. (207 aa)
	sntb1	Syntrophin, basic 1. (339 aa)
	sspn	Sarcospan (Kras oncogene-associated gene). (224 aa)
	LOC107102070	Uncharacterized protein. (298 aa)
	sgcg	Sarcoglycan, gamma. (290 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000006314	sntb1	ENSCVAP00000006314	ENSCVAP00000030593	PDZ domain-containing protein.	Syntrophin, basic 1.	0.769
ENSCVAP00000007137	LOC107088178	ENSCVAP00000007137	ENSCVAP00000026930	Uncharacterized protein.	Glycoprotein IX (platelet).	0.873
ENSCVAP00000007137	gp1bb	ENSCVAP00000007137	ENSCVAP00000029883	Uncharacterized protein.	Glycoprotein Ib platelet subunit beta.	0.882
ENSCVAP00000008644	LOC107088178	ENSCVAP00000008644	ENSCVAP00000026930	Si:ch211-237i5.4.	Glycoprotein IX (platelet).	0.873
ENSCVAP00000008644	gp1bb	ENSCVAP00000008644	ENSCVAP00000029883	Si:ch211-237i5.4.	Glycoprotein Ib platelet subunit beta.	0.882
ENSCVAP00000009864	ENSCVAP00000027785	ENSCVAP00000009864	ENSCVAP00000027785	Sarcoglycan, alpha.	Uncharacterized protein.	0.585
ENSCVAP00000009864	LOC107090395	ENSCVAP00000009864	ENSCVAP00000010917	Sarcoglycan, alpha.	Peptidase S72 domain-containing protein.	0.601
ENSCVAP00000009864	LOC107102070	ENSCVAP00000009864	ENSCVAP00000003007	Sarcoglycan, alpha.	Uncharacterized protein.	0.585
ENSCVAP00000009864	LOC107102255	ENSCVAP00000009864	ENSCVAP00000014580	Sarcoglycan, alpha.	Dystroglycan 1.	0.601
ENSCVAP00000009864	SGCZ	ENSCVAP00000009864	ENSCVAP00000001105	Sarcoglycan, alpha.	Sarcoglycan zeta.	0.788
ENSCVAP00000009864	sgcb	ENSCVAP00000009864	ENSCVAP00000022342	Sarcoglycan, alpha.	Sarcoglycan, beta (dystrophin-associated glycoprotein).	0.652
ENSCVAP00000009864	sgcd	ENSCVAP00000009864	ENSCVAP00000019604	Sarcoglycan, alpha.	Sarcoglycan, delta (dystrophin-associated glycoprotein).	0.700
ENSCVAP00000009864	sgcg	ENSCVAP00000009864	ENSCVAP00000025358	Sarcoglycan, alpha.	Sarcoglycan, gamma.	0.725
ENSCVAP00000009864	sspn	ENSCVAP00000009864	ENSCVAP00000004795	Sarcoglycan, alpha.	Sarcospan (Kras oncogene-associated gene).	0.733
ENSCVAP00000027785	ENSCVAP00000009864	ENSCVAP00000027785	ENSCVAP00000009864	Uncharacterized protein.	Sarcoglycan, alpha.	0.585
ENSCVAP00000027785	LOC107090395	ENSCVAP00000027785	ENSCVAP00000010917	Uncharacterized protein.	Peptidase S72 domain-containing protein.	0.566
ENSCVAP00000027785	LOC107102255	ENSCVAP00000027785	ENSCVAP00000014580	Uncharacterized protein.	Dystroglycan 1.	0.566
ENSCVAP00000027785	sgcb	ENSCVAP00000027785	ENSCVAP00000022342	Uncharacterized protein.	Sarcoglycan, beta (dystrophin-associated glycoprotein).	0.570
ENSCVAP00000027785	sgce	ENSCVAP00000027785	ENSCVAP00000028274	Uncharacterized protein.	Sarcoglycan, epsilon.	0.585
ENSCVAP00000027785	sgcg	ENSCVAP00000027785	ENSCVAP00000025358	Uncharacterized protein.	Sarcoglycan, gamma.	0.558