(14 nodes) Intraciliary transport particle network (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ift172	Intraflagellar transport 172. (1747 aa)
	ift74	Intraflagellar transport 74. (519 aa)
	traf3ip1	TNF receptor-associated factor 3 interacting protein 1. (606 aa)
	hspb11	Zgc:158640. (130 aa)
	ift57	Intraflagellar transport 57 homolog (Chlamydomonas). (412 aa)
	ift27	Intraflagellar transport 27 homolog (Chlamydomonas). (188 aa)
	wdr19	WD repeat domain 19. (1301 aa)
	ift46	Intraflagellar transport 46 homolog (Chlamydomonas). (286 aa)
	ift22	Intraflagellar transport 22 homolog (Chlamydomonas). (185 aa)
	IFT43	Intraflagellar transport 43. (218 aa)
	ift140	Intraflagellar transport 140 homolog (Chlamydomonas). (1414 aa)
	wdr35	WD repeat-containing protein 35. (1157 aa)
	IFT122	Intraflagellar transport 122. (620 aa)
	ENSCVAP00000012854	Uncharacterized protein. (94 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000012854	IFT43	ENSCVAP00000012854	ENSCVAP00000032384	Uncharacterized protein.	Intraflagellar transport 43.	0.966
ENSCVAP00000012854	hspb11	ENSCVAP00000012854	ENSCVAP00000023853	Uncharacterized protein.	Zgc:158640.	0.648
ENSCVAP00000012854	ift140	ENSCVAP00000012854	ENSCVAP00000000708	Uncharacterized protein.	Intraflagellar transport 140 homolog (Chlamydomonas).	0.975
ENSCVAP00000012854	ift172	ENSCVAP00000012854	ENSCVAP00000014460	Uncharacterized protein.	Intraflagellar transport 172.	0.844
ENSCVAP00000012854	ift22	ENSCVAP00000012854	ENSCVAP00000031863	Uncharacterized protein.	Intraflagellar transport 22 homolog (Chlamydomonas).	0.680
ENSCVAP00000012854	ift27	ENSCVAP00000012854	ENSCVAP00000026092	Uncharacterized protein.	Intraflagellar transport 27 homolog (Chlamydomonas).	0.549
ENSCVAP00000012854	ift46	ENSCVAP00000012854	ENSCVAP00000028254	Uncharacterized protein.	Intraflagellar transport 46 homolog (Chlamydomonas).	0.796
ENSCVAP00000012854	ift57	ENSCVAP00000012854	ENSCVAP00000025825	Uncharacterized protein.	Intraflagellar transport 57 homolog (Chlamydomonas).	0.827
ENSCVAP00000012854	ift74	ENSCVAP00000012854	ENSCVAP00000017232	Uncharacterized protein.	Intraflagellar transport 74.	0.749
ENSCVAP00000012854	traf3ip1	ENSCVAP00000012854	ENSCVAP00000023092	Uncharacterized protein.	TNF receptor-associated factor 3 interacting protein 1.	0.757
ENSCVAP00000012854	wdr19	ENSCVAP00000012854	ENSCVAP00000026361	Uncharacterized protein.	WD repeat domain 19.	0.977
ENSCVAP00000012854	wdr35	ENSCVAP00000012854	ENSCVAP00000002334	Uncharacterized protein.	WD repeat-containing protein 35.	0.974
IFT122	IFT43	ENSCVAP00000012180	ENSCVAP00000032384	Intraflagellar transport 122.	Intraflagellar transport 43.	0.966
IFT122	hspb11	ENSCVAP00000012180	ENSCVAP00000023853	Intraflagellar transport 122.	Zgc:158640.	0.648
IFT122	ift140	ENSCVAP00000012180	ENSCVAP00000000708	Intraflagellar transport 122.	Intraflagellar transport 140 homolog (Chlamydomonas).	0.975
IFT122	ift172	ENSCVAP00000012180	ENSCVAP00000014460	Intraflagellar transport 122.	Intraflagellar transport 172.	0.844
IFT122	ift22	ENSCVAP00000012180	ENSCVAP00000031863	Intraflagellar transport 122.	Intraflagellar transport 22 homolog (Chlamydomonas).	0.680
IFT122	ift27	ENSCVAP00000012180	ENSCVAP00000026092	Intraflagellar transport 122.	Intraflagellar transport 27 homolog (Chlamydomonas).	0.549
IFT122	ift46	ENSCVAP00000012180	ENSCVAP00000028254	Intraflagellar transport 122.	Intraflagellar transport 46 homolog (Chlamydomonas).	0.796
IFT122	ift57	ENSCVAP00000012180	ENSCVAP00000025825	Intraflagellar transport 122.	Intraflagellar transport 57 homolog (Chlamydomonas).	0.827