42 items (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107092814	Chromobox homolog 8a (Pc class homolog, Drosophila). (340 aa)
	cbx6	Chromobox homolog 6a. (488 aa)
	LOC107085518	Chromobox homolog 8b. (387 aa)
	ezh2	Enhancer of zeste 2 polycomb repressive complex 2 subunit. (761 aa)
	LOC107097880	Uncharacterized protein. (1384 aa)
	ENSCVAP00000006153	COMM domain containing 3. (193 aa)
	ENSCVAP00000006163	Bmi1 polycomb ring finger oncogene 1a. (332 aa)
	pcgf2	Polycomb group ring finger 2. (331 aa)
	LOC107087592	C2H2-type domain-containing protein. (166 aa)
	RING1	Ring finger protein 1. (389 aa)
	ENSCVAP00000009401	HARE-HTH domain-containing protein. (112 aa)
	pcgf1	Polycomb group ring finger 1. (260 aa)
	Phf19	PHD-type domain-containing protein. (230 aa)
	LOC107103488	Laminin, beta 2-like. (1541 aa)
	ubap2l	Ubiquitin associated protein 2-like. (1164 aa)
	Cenpe	Uncharacterized protein. (247 aa)
	ubap2	Ubiquitin associated protein 2a. (1260 aa)
	PCGF3	Polycomb group ring finger 3. (249 aa)
	LOC107096417	Microsomal glutathione S-transferase 3b. (140 aa)
	pcgf5	Polycomb group ring finger 5a. (245 aa)
	LOC107082907	Uncharacterized protein. (467 aa)
	rnf2	Ring finger protein 2. (342 aa)
	LOC107089015	Uncharacterized protein. (901 aa)
	EZH1	Enhancer of zeste 1 polycomb repressive complex 2 subunit. (768 aa)
	LOC107087282	Ubiquitin associated protein 2b. (1169 aa)
	LOC107092841	Chromobox homolog 4 (Pc class homolog, Drosophila). (549 aa)
	ENSCVAP00000022272	Metal response element binding transcription factor 2. (526 aa)
	LOC107087701	VEFS-Box domain-containing protein. (665 aa)
	cbx4	Chromobox 4. (565 aa)
	LOC107089316	Chromobox homolog 2 (Drosophila Pc class). (530 aa)
	LOC107086003	Uncharacterized protein. (267 aa)
	LOC107093081	Chromobox homolog 7a. (357 aa)
	ENSCVAP00000026073	ASXL transcriptional regulator 1. (1068 aa)
	rbbp4	Retinoblastoma binding protein 4. (424 aa)
	ENSCVAP00000027615	PHD finger protein 19. (324 aa)
	eed	Embryonic ectoderm development. (443 aa)
	pcgf6	Polycomb group ring finger 6. (248 aa)
	bap1	Ubiquitin carboxyl-terminal hydrolase. (724 aa)
	asxl2	ASXL transcriptional regulator 2. (1164 aa)
	LOC107104347	PHD finger protein 1. (472 aa)
	LOC107093481	SUZ12 polycomb repressive complex 2 subunit b. (680 aa)
	ENSCVAP00000001235	Chromobox homolog 7b. (162 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cenpe	bap1	ENSCVAP00000014795	ENSCVAP00000029831	Uncharacterized protein.	Ubiquitin carboxyl-terminal hydrolase.	0.753
ENSCVAP00000001235	ENSCVAP00000006153	ENSCVAP00000001235	ENSCVAP00000006153	Chromobox homolog 7b.	COMM domain containing 3.	0.457
ENSCVAP00000001235	ENSCVAP00000006163	ENSCVAP00000001235	ENSCVAP00000006163	Chromobox homolog 7b.	Bmi1 polycomb ring finger oncogene 1a.	0.702
ENSCVAP00000001235	EZH1	ENSCVAP00000001235	ENSCVAP00000019320	Chromobox homolog 7b.	Enhancer of zeste 1 polycomb repressive complex 2 subunit.	0.497
ENSCVAP00000001235	LOC107082907	ENSCVAP00000001235	ENSCVAP00000017101	Chromobox homolog 7b.	Uncharacterized protein.	0.544
ENSCVAP00000001235	LOC107085518	ENSCVAP00000001235	ENSCVAP00000005519	Chromobox homolog 7b.	Chromobox homolog 8b.	0.412
ENSCVAP00000001235	LOC107087701	ENSCVAP00000001235	ENSCVAP00000023368	Chromobox homolog 7b.	VEFS-Box domain-containing protein.	0.534
ENSCVAP00000001235	LOC107089015	ENSCVAP00000001235	ENSCVAP00000018662	Chromobox homolog 7b.	Uncharacterized protein.	0.517
ENSCVAP00000001235	LOC107089316	ENSCVAP00000001235	ENSCVAP00000023843	Chromobox homolog 7b.	Chromobox homolog 2 (Drosophila Pc class).	0.544
ENSCVAP00000001235	LOC107092814	ENSCVAP00000001235	ENSCVAP00000001830	Chromobox homolog 7b.	Chromobox homolog 8a (Pc class homolog, Drosophila).	0.412
ENSCVAP00000001235	LOC107093481	ENSCVAP00000001235	ENSCVAP00000000036	Chromobox homolog 7b.	SUZ12 polycomb repressive complex 2 subunit b.	0.534
ENSCVAP00000001235	PCGF3	ENSCVAP00000001235	ENSCVAP00000015584	Chromobox homolog 7b.	Polycomb group ring finger 3.	0.555
ENSCVAP00000001235	RING1	ENSCVAP00000001235	ENSCVAP00000008579	Chromobox homolog 7b.	Ring finger protein 1.	0.817
ENSCVAP00000001235	eed	ENSCVAP00000001235	ENSCVAP00000027768	Chromobox homolog 7b.	Embryonic ectoderm development.	0.773
ENSCVAP00000001235	ezh2	ENSCVAP00000001235	ENSCVAP00000005808	Chromobox homolog 7b.	Enhancer of zeste 2 polycomb repressive complex 2 subunit.	0.497
ENSCVAP00000001235	pcgf1	ENSCVAP00000001235	ENSCVAP00000010881	Chromobox homolog 7b.	Polycomb group ring finger 1.	0.563
ENSCVAP00000001235	pcgf2	ENSCVAP00000001235	ENSCVAP00000006372	Chromobox homolog 7b.	Polycomb group ring finger 2.	0.702
ENSCVAP00000001235	pcgf5	ENSCVAP00000001235	ENSCVAP00000016686	Chromobox homolog 7b.	Polycomb group ring finger 5a.	0.555
ENSCVAP00000001235	pcgf6	ENSCVAP00000001235	ENSCVAP00000029240	Chromobox homolog 7b.	Polycomb group ring finger 6.	0.708
ENSCVAP00000001235	rnf2	ENSCVAP00000001235	ENSCVAP00000018052	Chromobox homolog 7b.	Ring finger protein 2.	0.878