(18 nodes) PRC1 complex network (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSCVAP00000001235	Chromobox homolog 7b. (162 aa)
	LOC107092814	Chromobox homolog 8a (Pc class homolog, Drosophila). (340 aa)
	cbx6	Chromobox homolog 6a. (488 aa)
	LOC107085518	Chromobox homolog 8b. (387 aa)
	LOC107097880	Uncharacterized protein. (1384 aa)
	ENSCVAP00000006153	COMM domain containing 3. (193 aa)
	RING1	Ring finger protein 1. (389 aa)
	LOC107103488	Laminin, beta 2-like. (1541 aa)
	PCGF3	Polycomb group ring finger 3. (249 aa)
	LOC107096417	Microsomal glutathione S-transferase 3b. (140 aa)
	LOC107082907	Uncharacterized protein. (467 aa)
	rnf2	Ring finger protein 2. (342 aa)
	LOC107089015	Uncharacterized protein. (901 aa)
	LOC107092841	Chromobox homolog 4 (Pc class homolog, Drosophila). (549 aa)
	cbx4	Chromobox 4. (565 aa)
	LOC107089316	Chromobox homolog 2 (Drosophila Pc class). (530 aa)
	LOC107093081	Chromobox homolog 7a. (357 aa)
	pcgf6	Polycomb group ring finger 6. (248 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000001235	ENSCVAP00000006153	ENSCVAP00000001235	ENSCVAP00000006153	Chromobox homolog 7b.	COMM domain containing 3.	0.457
ENSCVAP00000001235	LOC107082907	ENSCVAP00000001235	ENSCVAP00000017101	Chromobox homolog 7b.	Uncharacterized protein.	0.544
ENSCVAP00000001235	LOC107085518	ENSCVAP00000001235	ENSCVAP00000005519	Chromobox homolog 7b.	Chromobox homolog 8b.	0.412
ENSCVAP00000001235	LOC107089015	ENSCVAP00000001235	ENSCVAP00000018662	Chromobox homolog 7b.	Uncharacterized protein.	0.517
ENSCVAP00000001235	LOC107089316	ENSCVAP00000001235	ENSCVAP00000023843	Chromobox homolog 7b.	Chromobox homolog 2 (Drosophila Pc class).	0.544
ENSCVAP00000001235	LOC107092814	ENSCVAP00000001235	ENSCVAP00000001830	Chromobox homolog 7b.	Chromobox homolog 8a (Pc class homolog, Drosophila).	0.412
ENSCVAP00000001235	PCGF3	ENSCVAP00000001235	ENSCVAP00000015584	Chromobox homolog 7b.	Polycomb group ring finger 3.	0.555
ENSCVAP00000001235	RING1	ENSCVAP00000001235	ENSCVAP00000008579	Chromobox homolog 7b.	Ring finger protein 1.	0.817
ENSCVAP00000001235	pcgf6	ENSCVAP00000001235	ENSCVAP00000029240	Chromobox homolog 7b.	Polycomb group ring finger 6.	0.708
ENSCVAP00000001235	rnf2	ENSCVAP00000001235	ENSCVAP00000018052	Chromobox homolog 7b.	Ring finger protein 2.	0.878
ENSCVAP00000006153	ENSCVAP00000001235	ENSCVAP00000006153	ENSCVAP00000001235	COMM domain containing 3.	Chromobox homolog 7b.	0.457
ENSCVAP00000006153	LOC107082907	ENSCVAP00000006153	ENSCVAP00000017101	COMM domain containing 3.	Uncharacterized protein.	0.457
ENSCVAP00000006153	LOC107085518	ENSCVAP00000006153	ENSCVAP00000005519	COMM domain containing 3.	Chromobox homolog 8b.	0.457
ENSCVAP00000006153	LOC107089316	ENSCVAP00000006153	ENSCVAP00000023843	COMM domain containing 3.	Chromobox homolog 2 (Drosophila Pc class).	0.457
ENSCVAP00000006153	LOC107092814	ENSCVAP00000006153	ENSCVAP00000001830	COMM domain containing 3.	Chromobox homolog 8a (Pc class homolog, Drosophila).	0.457
ENSCVAP00000006153	LOC107092841	ENSCVAP00000006153	ENSCVAP00000021067	COMM domain containing 3.	Chromobox homolog 4 (Pc class homolog, Drosophila).	0.457
ENSCVAP00000006153	LOC107093081	ENSCVAP00000006153	ENSCVAP00000025334	COMM domain containing 3.	Chromobox homolog 7a.	0.457
ENSCVAP00000006153	RING1	ENSCVAP00000006153	ENSCVAP00000008579	COMM domain containing 3.	Ring finger protein 1.	0.776
ENSCVAP00000006153	cbx4	ENSCVAP00000006153	ENSCVAP00000023508	COMM domain containing 3.	Chromobox 4.	0.457
ENSCVAP00000006153	cbx6	ENSCVAP00000006153	ENSCVAP00000004578	COMM domain containing 3.	Chromobox homolog 6a.	0.457