STRINGSTRING
uhmk1 uhmk1 zc3h12d zc3h12d LOC107100266 LOC107100266 LOC107102670 LOC107102670 ENSCVAP00000000595 ENSCVAP00000000595 trim71 trim71 ddx6 ddx6 LOC107084366 LOC107084366 LOC107095074 LOC107095074 edc3 edc3 EIF4ENIF1 EIF4ENIF1 ENDOV ENDOV pum1 pum1 edc4 edc4 LOC107087113 LOC107087113 ENSCVAP00000021943 ENSCVAP00000021943 LOC107095218 LOC107095218 ddx28 ddx28 eif2s1 eif2s1 LOC107095755 LOC107095755 Ct55 Ct55 pum2 pum2 LOC107105018 LOC107105018 LOC107098531 LOC107098531 ybx1 ybx1 dcp1a dcp1a ENSCVAP00000019827 ENSCVAP00000019827 nrde2 nrde2 piwil2 piwil2 larp1 larp1 cnot9 cnot9 LOC107083412 LOC107083412 RBM20 RBM20 HNRNPLL HNRNPLL YTHDC2 YTHDC2 tdrd1 tdrd1 kiaa0355 kiaa0355 HABP4 HABP4 LOC107104034 LOC107104034 mex3a mex3a LIMD1 LIMD1 LOC107096430 LOC107096430 LOC107091385 LOC107091385 ythdf3 ythdf3 LOC107084966 LOC107084966 LOC107095954 LOC107095954 ENSCVAP00000014668 ENSCVAP00000014668 Ago4 Ago4 ENSCVAP00000014567 ENSCVAP00000014567 LOC107093008 LOC107093008 pqbp1 pqbp1 ENSCVAP00000014200 ENSCVAP00000014200 LOC107091963 LOC107091963 Tdrd15 Tdrd15 ENSCVAP00000013594 ENSCVAP00000013594 Lgalsl Lgalsl LOC107094290 LOC107094290 ythdf2 ythdf2 LOC107104242 LOC107104242 ENSCVAP00000012554 ENSCVAP00000012554 LOC107087450 LOC107087450 mcrip1 mcrip1 PPP1R27 PPP1R27 ENSCVAP00000012418 ENSCVAP00000012418 YTHDF1 YTHDF1 ENSCVAP00000011859 ENSCVAP00000011859 RBPMS RBPMS LOC107093786 LOC107093786 LOC107080858 LOC107080858 xrn1 xrn1 MOV10 MOV10 ENSCVAP00000009943 ENSCVAP00000009943 BTBD1 BTBD1 fmr1 fmr1 LOC107098936 LOC107098936 sumo1 sumo1 cunh8orf88 cunh8orf88 zc3h12b zc3h12b LOC107084294 LOC107084294 LOC107096660 LOC107096660 pan2 pan2 LOC107087615 LOC107087615 LOC107102484 LOC107102484 ENSCVAP00000007386 ENSCVAP00000007386 ENSCVAP00000007305 ENSCVAP00000007305 LOC107099037 LOC107099037 LOC107103113 LOC107103113 ppp1r27 ppp1r27 LOC107085517 LOC107085517 tdrd9 tdrd9 LOC107101468 LOC107101468 ENSCVAP00000005537 ENSCVAP00000005537 zfand1 zfand1 patl1 patl1 dhx30 dhx30 g3bp1 g3bp1 LOC107103767 LOC107103767 tial1 tial1 ogfod1 ogfod1 dhx36 dhx36 LOC107088373 LOC107088373 ENSCVAP00000003299 ENSCVAP00000003299 LOC107104841 LOC107104841 poldip3 poldip3 lsm1 lsm1 rc3h1 rc3h1 ENSCVAP00000025143 ENSCVAP00000025143 trub2 trub2 g3bp2 g3bp2 LOC107095522 LOC107095522 henmt1 henmt1 rc3h2 rc3h2 fastkd2 fastkd2 LOC107097556 LOC107097556 LOC107098777 LOC107098777 LOC107084690 LOC107084690 LOC107084711 LOC107084711 LOC107082980 LOC107082980 LOC107082989 LOC107082989 LOC107096948 LOC107096948 ENSCVAP00000030383 ENSCVAP00000030383 LOC107101106 LOC107101106 atxn2 atxn2 hnrnpl hnrnpl dis3l2 dis3l2 LOC107104527 LOC107104527 LOC107103981 LOC107103981 mcrip2 mcrip2 ENSCVAP00000032338 ENSCVAP00000032338
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
Your Input:
uhmk1U2AF homology motif (UHM) kinase 1. (432 aa)
zc3h12dC3H1-type domain-containing protein. (510 aa)
LOC107100266DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...] (752 aa)
LOC107102670Si:dkey-206d17.12. (600 aa)
ENSCVAP00000000595Uncharacterized protein. (599 aa)
trim71Tripartite motif containing 71, E3 ubiquitin protein ligase. (836 aa)
ddx6DEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family. (479 aa)
LOC107084366Protein argonaute-2; Required for RNA-mediated gene silencing (RNAi) by the RNA- induced silencing complex (RISC). The 'minimal RISC' appears to include ago2 bound to a short guide RNA such as a microRNA (miRNA) or short interfering RNA (siRNA). These guide RNAs direct RISC to complementary mRNAs that are targets for RISC-mediated gene silencing. The precise mechanism of gene silencing depends on the degree of complementarity between the miRNA or siRNA and its target. Binding of RISC to a perfectly complementary mRNA generally results in silencing due to endonucleolytic cleavage of the [...] (869 aa)
LOC107095074Zgc:193690. (456 aa)
edc3Enhancer of mRNA decapping 3 homolog (S. cerevisiae). (477 aa)
EIF4ENIF1Eukaryotic translation initiation factor 4E nuclear import factor 1. (817 aa)
ENDOVEndonuclease V. (252 aa)
pum1Pumilio RNA-binding family member 1. (1163 aa)
edc4Enhancer of mRNA decapping 4. (1385 aa)
LOC107087113La ribonucleoprotein domain family, member 1B. (1103 aa)
ENSCVAP00000021943Helicase ATP-binding domain-containing protein. (187 aa)
LOC107095218Uncharacterized protein. (153 aa)
ddx28DEAD (Asp-Glu-Ala-Asp) box polypeptide 28. (554 aa)
eif2s1Eukaryotic translation initiation factor 2, subunit 1 alpha b. (315 aa)
LOC107095755Galectin. (181 aa)
Ct55Uncharacterized protein. (1011 aa)
pum2Pumilio RNA-binding family member 2. (1292 aa)
LOC107105018C3H1-type domain-containing protein. (934 aa)
LOC107098531Mov10 RISC complex RNA helicase a. (933 aa)
ybx1Y box binding protein 1. (299 aa)
dcp1aDecapping mRNA 1A. (485 aa)
ENSCVAP00000019827TNRC6-PABC_bdg domain-containing protein. (1716 aa)
nrde2NRDE-2, necessary for RNA interference, domain containing. (1176 aa)
piwil2Piwi-like RNA-mediated gene silencing 2; Belongs to the argonaute family. (1014 aa)
larp1La ribonucleoprotein domain family, member 1. (1100 aa)
cnot9CCR4-NOT transcription complex subunit 9. (299 aa)
LOC107083412Glycerophosphodiester phosphodiesterase 1. (309 aa)
RBM20RNA binding motif protein 20. (1065 aa)
HNRNPLLHeterogeneous nuclear ribonucleoprotein L like. (476 aa)
YTHDC2YTH domain containing 2. (1387 aa)
tdrd1Tudor domain containing 1. (989 aa)
kiaa0355Si:ch211-79l17.1. (1078 aa)
HABP4Hyaluronan binding protein 4. (333 aa)
LOC107104034Tudor and KH domain containing. (438 aa)
mex3aRING-type domain-containing protein. (517 aa)
LIMD1LIM domains containing 1. (540 aa)
LOC107096430Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (616 aa)
LOC107091385Uncharacterized protein. (489 aa)
ythdf3YTH N(6)-methyladenosine RNA binding protein 3. (599 aa)
LOC107084966Proline-rich nuclear receptor coactivator 2. (157 aa)
LOC107095954YTH N(6)-methyladenosine RNA binding protein 1. (615 aa)
ENSCVAP00000014668ArgoN domain-containing protein. (216 aa)
Ago4Argonaute RISC component 4. (252 aa)
ENSCVAP00000014567Piwi domain-containing protein. (297 aa)
LOC107093008ELAV-like protein; Belongs to the RRM elav family. (344 aa)
pqbp1Polyglutamine binding protein 1. (236 aa)
ENSCVAP00000014200Uncharacterized protein. (259 aa)
LOC107091963ELAV-like protein; Belongs to the RRM elav family. (364 aa)
Tdrd15Si:dkeyp-93d12.1. (1829 aa)
ENSCVAP00000013594PAT1 homolog 2. (578 aa)
LgalslGalectin. (132 aa)
LOC107094290LsmAD domain-containing protein. (1017 aa)
ythdf2YTH N(6)-methyladenosine RNA binding protein 2. (635 aa)
LOC107104242RNA pseudouridine synthase D4. (389 aa)
ENSCVAP00000012554Uncharacterized protein. (585 aa)
LOC107087450Aly/REF export factor. (268 aa)
mcrip1MAPK regulated corepressor interacting protein 1. (98 aa)
PPP1R27Protein phosphatase 1 regulatory subunit 27. (232 aa)
ENSCVAP00000012418Platelet/endothelial cell adhesion molecule 1. (645 aa)
YTHDF1YTH N6-methyladenosine RNA binding protein 1. (615 aa)
ENSCVAP00000011859HTH La-type RNA-binding domain-containing protein. (215 aa)
RBPMSRNA binding protein, mRNA processing factor. (194 aa)
LOC107093786Cytotoxic granule-associated RNA binding protein 1, like. (364 aa)
LOC107080858Uncharacterized protein. (655 aa)
xrn15'-3' exoribonuclease 1. (1091 aa)
MOV10Mov10 RISC complex RNA helicase. (926 aa)
ENSCVAP00000009943Nanos homolog 3; Belongs to the nanos family. (202 aa)
BTBD1BTB domain containing 1. (480 aa)
fmr1Fragile X mental retardation 1. (549 aa)
LOC107098936PAZ domain-containing protein. (463 aa)
sumo1Small ubiquitin-related modifier. (76 aa)
cunh8orf88Uncharacterized protein. (120 aa)
zc3h12bZinc finger CCCH-type containing 12B. (852 aa)
LOC107084294DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...] (588 aa)
LOC107096660Si:dkey-46g23.1. (1977 aa)
pan2PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent [...] (1210 aa)
LOC107087615DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...] (730 aa)
LOC107102484LIM domain-containing protein ajuba-like. (121 aa)
ENSCVAP00000007386Uncharacterized protein. (105 aa)
ENSCVAP00000007305Ankyrin repeat, SAM and basic leucine zipper domain containing 1. (411 aa)
LOC107099037Tudor domain containing 7 b. (1134 aa)
LOC107103113RNA pseudouridine synthase D4. (390 aa)
ppp1r27Protein phosphatase 1, regulatory subunit 27b. (167 aa)
LOC107085517Si:dkey-237i9.8. (687 aa)
tdrd9Tudor domain containing 9. (1230 aa)
LOC107101468Ajuba LIM protein. (704 aa)
ENSCVAP00000005537Nanos homolog 2; Belongs to the nanos family. (135 aa)
zfand1Zinc finger, AN1-type domain 1. (225 aa)
patl1PAT1 homolog 1, processing body mRNA decay factor. (718 aa)
dhx30DEAH (Asp-Glu-Ala-His) box helicase 30. (951 aa)
g3bp1GTPase activating protein (SH3 domain) binding protein 1. (495 aa)
LOC107103767Calcium regulated heat stable protein 1. (162 aa)
tial1TIA1 cytotoxic granule-associated RNA binding protein-like 1. (370 aa)
ogfod12-oxoglutarate and iron-dependent oxygenase domain containing 1. (410 aa)
dhx36DEAH (Asp-Glu-Ala-His) box polypeptide 36. (1071 aa)
LOC107088373Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (635 aa)
ENSCVAP00000003299Uncharacterized protein. (533 aa)
LOC107104841G-rich RNA sequence binding factor 1. (374 aa)
poldip3Polymerase (DNA-directed), delta interacting protein 3. (464 aa)
lsm1U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (133 aa)
rc3h1Ring finger and CCCH-type domains 1b. (1127 aa)
ENSCVAP00000025143Uncharacterized protein. (122 aa)
trub2TruB pseudouridine (psi) synthase family member 2. (332 aa)
g3bp2Zgc:56304. (509 aa)
LOC107095522Uncharacterized protein; Belongs to the DEAD box helicase family. (482 aa)
henmt1HEN methyltransferase 1. (365 aa)
rc3h2Ring finger and CCCH-type domains 2. (1118 aa)
fastkd2FAST kinase domains 2. (669 aa)
LOC107097556Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (639 aa)
LOC107098777TIA1 cytotoxic granule-associated RNA binding protein. (387 aa)
LOC107084690Lin-28 homolog A. (202 aa)
LOC107084711Zinc finger CCCH-type containing 12A. (619 aa)
LOC107082980Argonaute RISC component 1; Belongs to the argonaute family. (858 aa)
LOC107082989Protein argonaute-3; Required for RNA-mediated gene silencing (RNAi). Binds to short RNAs such as microRNAs (miRNAs) and represses the translation of mRNAs which are complementary to them. Lacks endonuclease activity and does not appear to cleave target mRNAs; Belongs to the argonaute family. Ago subfamily. (860 aa)
LOC107096948BTB (POZ) domain containing 2b. (577 aa)
ENSCVAP00000030383Tudor domain-containing protein. (191 aa)
LOC107101106Tudor domain containing 7 a. (975 aa)
atxn2Ataxin 2. (1116 aa)
hnrnplHeterogeneous nuclear ribonucleoprotein L. (541 aa)
dis3l2DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of both mRNAs and miRNAs that have been polyuridylated by a terminal uridylyltransferase. Essential for correct mitosis, and negatively regulates cell proliferation. Belongs to the RNR ribonuclease family. DIS3L2 subfamily. (1013 aa)
LOC107104527Uncharacterized protein. (550 aa)
LOC107103981Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (635 aa)
mcrip2Si:dkey-44g23.5. (144 aa)
ENSCVAP00000032338Uncharacterized protein. (388 aa)
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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