(12 nodes) P granule network (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cunh8orf88	Uncharacterized protein. (120 aa)
	tdrd1	Tudor domain containing 1. (989 aa)
	LOC107104034	Tudor and KH domain containing. (438 aa)
	ENSCVAP00000012554	Uncharacterized protein. (585 aa)
	ENSCVAP00000009943	Nanos homolog 3; Belongs to the nanos family. (202 aa)
	piwil2	Piwi-like RNA-mediated gene silencing 2; Belongs to the argonaute family. (1014 aa)
	ENSCVAP00000007305	Ankyrin repeat, SAM and basic leucine zipper domain containing 1. (411 aa)
	tdrd9	Tudor domain containing 9. (1230 aa)
	LOC107103767	Calcium regulated heat stable protein 1. (162 aa)
	ENSCVAP00000003299	Uncharacterized protein. (533 aa)
	henmt1	HEN methyltransferase 1. (365 aa)
	ENSCVAP00000021943	Helicase ATP-binding domain-containing protein. (187 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000003299	ENSCVAP00000009943	ENSCVAP00000003299	ENSCVAP00000009943	Uncharacterized protein.	Nanos homolog 3; Belongs to the nanos family.	0.486
ENSCVAP00000007305	ENSCVAP00000012554	ENSCVAP00000007305	ENSCVAP00000012554	Ankyrin repeat, SAM and basic leucine zipper domain containing 1.	Uncharacterized protein.	0.529
ENSCVAP00000007305	ENSCVAP00000021943	ENSCVAP00000007305	ENSCVAP00000021943	Ankyrin repeat, SAM and basic leucine zipper domain containing 1.	Helicase ATP-binding domain-containing protein.	0.440
ENSCVAP00000007305	LOC107104034	ENSCVAP00000007305	ENSCVAP00000017203	Ankyrin repeat, SAM and basic leucine zipper domain containing 1.	Tudor and KH domain containing.	0.643
ENSCVAP00000007305	henmt1	ENSCVAP00000007305	ENSCVAP00000026480	Ankyrin repeat, SAM and basic leucine zipper domain containing 1.	HEN methyltransferase 1.	0.630
ENSCVAP00000007305	piwil2	ENSCVAP00000007305	ENSCVAP00000019527	Ankyrin repeat, SAM and basic leucine zipper domain containing 1.	Piwi-like RNA-mediated gene silencing 2; Belongs to the argonaute family.	0.773
ENSCVAP00000007305	tdrd1	ENSCVAP00000007305	ENSCVAP00000017795	Ankyrin repeat, SAM and basic leucine zipper domain containing 1.	Tudor domain containing 1.	0.736
ENSCVAP00000007305	tdrd9	ENSCVAP00000007305	ENSCVAP00000005925	Ankyrin repeat, SAM and basic leucine zipper domain containing 1.	Tudor domain containing 9.	0.703
ENSCVAP00000009943	ENSCVAP00000003299	ENSCVAP00000009943	ENSCVAP00000003299	Nanos homolog 3; Belongs to the nanos family.	Uncharacterized protein.	0.486
ENSCVAP00000009943	ENSCVAP00000021943	ENSCVAP00000009943	ENSCVAP00000021943	Nanos homolog 3; Belongs to the nanos family.	Helicase ATP-binding domain-containing protein.	0.532
ENSCVAP00000009943	piwil2	ENSCVAP00000009943	ENSCVAP00000019527	Nanos homolog 3; Belongs to the nanos family.	Piwi-like RNA-mediated gene silencing 2; Belongs to the argonaute family.	0.584
ENSCVAP00000012554	ENSCVAP00000007305	ENSCVAP00000012554	ENSCVAP00000007305	Uncharacterized protein.	Ankyrin repeat, SAM and basic leucine zipper domain containing 1.	0.529
ENSCVAP00000012554	henmt1	ENSCVAP00000012554	ENSCVAP00000026480	Uncharacterized protein.	HEN methyltransferase 1.	0.448
ENSCVAP00000012554	piwil2	ENSCVAP00000012554	ENSCVAP00000019527	Uncharacterized protein.	Piwi-like RNA-mediated gene silencing 2; Belongs to the argonaute family.	0.821
ENSCVAP00000012554	tdrd9	ENSCVAP00000012554	ENSCVAP00000005925	Uncharacterized protein.	Tudor domain containing 9.	0.687
ENSCVAP00000021943	ENSCVAP00000007305	ENSCVAP00000021943	ENSCVAP00000007305	Helicase ATP-binding domain-containing protein.	Ankyrin repeat, SAM and basic leucine zipper domain containing 1.	0.440
ENSCVAP00000021943	ENSCVAP00000009943	ENSCVAP00000021943	ENSCVAP00000009943	Helicase ATP-binding domain-containing protein.	Nanos homolog 3; Belongs to the nanos family.	0.532
ENSCVAP00000021943	piwil2	ENSCVAP00000021943	ENSCVAP00000019527	Helicase ATP-binding domain-containing protein.	Piwi-like RNA-mediated gene silencing 2; Belongs to the argonaute family.	0.655
ENSCVAP00000021943	tdrd1	ENSCVAP00000021943	ENSCVAP00000017795	Helicase ATP-binding domain-containing protein.	Tudor domain containing 1.	0.417
ENSCVAP00000021943	tdrd9	ENSCVAP00000021943	ENSCVAP00000005925	Helicase ATP-binding domain-containing protein.	Tudor domain containing 9.	0.479