(27 nodes) SAGA-type complex network (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	taf9	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (247 aa)
	LOC107104488	N-acetyltransferase domain-containing protein. (787 aa)
	kat14	Lysine acetyltransferase 14. (787 aa)
	tada3	Transcriptional adaptor 3 (NGG1 homolog, yeast)-like. (431 aa)
	SUPT3H	SPT3 homolog, SAGA and STAGA complex component. (346 aa)
	taf5l	TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor. (599 aa)
	taf10	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family. (184 aa)
	taf6l	TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor. (655 aa)
	mbip	MAP3K12 binding inhibitory protein 1. (336 aa)
	supt7l	SPT7 like, STAGA complex gamma subunit. (433 aa)
	ENSCVAP00000018429	Uncharacterized protein. (267 aa)
	trrap	Transformation/transcription domain-associated protein; Belongs to the PI3/PI4-kinase family. (2570 aa)
	taf5	TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (745 aa)
	taf12	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (156 aa)
	supt20h	SPT20 homolog, SAGA complex component. (833 aa)
	LOC107083184	Ubiquitin carboxyl-terminal hydrolase. (522 aa)
	tada2b	Transcriptional adapter. (417 aa)
	sgf29	SAGA complex associated factor 29. (290 aa)
	LOC107090321	Ubiquitin carboxyl-terminal hydrolase. (506 aa)
	LOC107097537	Uncharacterized protein. (745 aa)
	zzz3	Zinc finger, ZZ-type containing 3. (839 aa)
	TADA1	Transcriptional adaptor 1. (307 aa)
	yeats2	YEATS domain containing 2. (1437 aa)
	LOC107085078	Ataxin-7-like protein 3; Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. (209 aa)
	atxn7l3	Ataxin-7-like protein 3; Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. (359 aa)
	tada2a	Transcriptional adapter. (445 aa)
	efr3a	EFR3 homolog A (S. cerevisiae). (826 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000018429	LOC107083184	ENSCVAP00000018429	ENSCVAP00000009097	Uncharacterized protein.	Ubiquitin carboxyl-terminal hydrolase.	0.916
ENSCVAP00000018429	LOC107085078	ENSCVAP00000018429	ENSCVAP00000031428	Uncharacterized protein.	Ataxin-7-like protein 3; Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription.	0.852
ENSCVAP00000018429	LOC107090321	ENSCVAP00000018429	ENSCVAP00000012158	Uncharacterized protein.	Ubiquitin carboxyl-terminal hydrolase.	0.916
ENSCVAP00000018429	SUPT3H	ENSCVAP00000018429	ENSCVAP00000028007	Uncharacterized protein.	SPT3 homolog, SAGA and STAGA complex component.	0.957
ENSCVAP00000018429	TADA1	ENSCVAP00000018429	ENSCVAP00000027395	Uncharacterized protein.	Transcriptional adaptor 1.	0.904
ENSCVAP00000018429	atxn7l3	ENSCVAP00000018429	ENSCVAP00000029004	Uncharacterized protein.	Ataxin-7-like protein 3; Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription.	0.852
ENSCVAP00000018429	sgf29	ENSCVAP00000018429	ENSCVAP00000011991	Uncharacterized protein.	SAGA complex associated factor 29.	0.959
ENSCVAP00000018429	supt20h	ENSCVAP00000018429	ENSCVAP00000008406	Uncharacterized protein.	SPT20 homolog, SAGA complex component.	0.945
ENSCVAP00000018429	supt7l	ENSCVAP00000018429	ENSCVAP00000002440	Uncharacterized protein.	SPT7 like, STAGA complex gamma subunit.	0.942
ENSCVAP00000018429	tada2a	ENSCVAP00000018429	ENSCVAP00000030082	Uncharacterized protein.	Transcriptional adapter.	0.964
ENSCVAP00000018429	tada2b	ENSCVAP00000018429	ENSCVAP00000011934	Uncharacterized protein.	Transcriptional adapter.	0.930
ENSCVAP00000018429	tada3	ENSCVAP00000018429	ENSCVAP00000004160	Uncharacterized protein.	Transcriptional adaptor 3 (NGG1 homolog, yeast)-like.	0.974
ENSCVAP00000018429	taf10	ENSCVAP00000018429	ENSCVAP00000001323	Uncharacterized protein.	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	0.972
ENSCVAP00000018429	taf12	ENSCVAP00000018429	ENSCVAP00000014399	Uncharacterized protein.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.960
ENSCVAP00000018429	taf5	ENSCVAP00000018429	ENSCVAP00000015890	Uncharacterized protein.	TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.871
ENSCVAP00000018429	taf5l	ENSCVAP00000018429	ENSCVAP00000027522	Uncharacterized protein.	TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.	0.871
ENSCVAP00000018429	taf6l	ENSCVAP00000018429	ENSCVAP00000020352	Uncharacterized protein.	TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.	0.914
ENSCVAP00000018429	taf9	ENSCVAP00000018429	ENSCVAP00000025190	Uncharacterized protein.	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.972
ENSCVAP00000018429	trrap	ENSCVAP00000018429	ENSCVAP00000018347	Uncharacterized protein.	Transformation/transcription domain-associated protein; Belongs to the PI3/PI4-kinase family.	0.921
ENSCVAP00000018429	yeats2	ENSCVAP00000018429	ENSCVAP00000031320	Uncharacterized protein.	YEATS domain containing 2.	0.643