14 items (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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Others

textmining

co-expression

protein homology

Your Input:
	ppie	Peptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (301 aa)
	crnkl1	Crooked neck pre-mRNA splicing factor 1. (743 aa)
	cwc22	CWC22 spliceosome associated protein homolog. (1010 aa)
	LOC107091769	Cwf21 domain-containing protein. (1349 aa)
	aqr	Aquarius intron-binding spliceosomal factor. (1469 aa)
	rbm22	RNA binding motif protein 22. (427 aa)
	EFL1	Elongation factor like GTPase 1. (1070 aa)
	snw1	SNW domain containing 1. (498 aa)
	xab2	XPA binding protein 2. (849 aa)
	eftud2	Elongation factor Tu GTP binding domain containing 2. (1003 aa)
	sart3	Spliceosome associated factor 3, U4/U6 recycling protein. (943 aa)
	cwc15	CWC15 spliceosome associated protein homolog. (238 aa)
	ppil1	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (166 aa)
	snrnp40	Small nuclear ribonucleoprotein 40 (U5). (347 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EFL1	LOC107091769	ENSCVAP00000009808	ENSCVAP00000021451	Elongation factor like GTPase 1.	Cwf21 domain-containing protein.	0.642
EFL1	aqr	ENSCVAP00000009808	ENSCVAP00000002296	Elongation factor like GTPase 1.	Aquarius intron-binding spliceosomal factor.	0.733
EFL1	crnkl1	ENSCVAP00000009808	ENSCVAP00000028240	Elongation factor like GTPase 1.	Crooked neck pre-mRNA splicing factor 1.	0.777
EFL1	cwc15	ENSCVAP00000009808	ENSCVAP00000012029	Elongation factor like GTPase 1.	CWC15 spliceosome associated protein homolog.	0.744
EFL1	cwc22	ENSCVAP00000009808	ENSCVAP00000025219	Elongation factor like GTPase 1.	CWC22 spliceosome associated protein homolog.	0.746
EFL1	rbm22	ENSCVAP00000009808	ENSCVAP00000008787	Elongation factor like GTPase 1.	RNA binding motif protein 22.	0.549
EFL1	sart3	ENSCVAP00000009808	ENSCVAP00000019501	Elongation factor like GTPase 1.	Spliceosome associated factor 3, U4/U6 recycling protein.	0.413
EFL1	snrnp40	ENSCVAP00000009808	ENSCVAP00000005660	Elongation factor like GTPase 1.	Small nuclear ribonucleoprotein 40 (U5).	0.870
EFL1	snw1	ENSCVAP00000009808	ENSCVAP00000010064	Elongation factor like GTPase 1.	SNW domain containing 1.	0.759
EFL1	xab2	ENSCVAP00000009808	ENSCVAP00000010458	Elongation factor like GTPase 1.	XPA binding protein 2.	0.772
LOC107091769	EFL1	ENSCVAP00000021451	ENSCVAP00000009808	Cwf21 domain-containing protein.	Elongation factor like GTPase 1.	0.642
LOC107091769	aqr	ENSCVAP00000021451	ENSCVAP00000002296	Cwf21 domain-containing protein.	Aquarius intron-binding spliceosomal factor.	0.746
LOC107091769	crnkl1	ENSCVAP00000021451	ENSCVAP00000028240	Cwf21 domain-containing protein.	Crooked neck pre-mRNA splicing factor 1.	0.932
LOC107091769	cwc15	ENSCVAP00000021451	ENSCVAP00000012029	Cwf21 domain-containing protein.	CWC15 spliceosome associated protein homolog.	0.948
LOC107091769	cwc22	ENSCVAP00000021451	ENSCVAP00000025219	Cwf21 domain-containing protein.	CWC22 spliceosome associated protein homolog.	0.986
LOC107091769	eftud2	ENSCVAP00000021451	ENSCVAP00000010358	Cwf21 domain-containing protein.	Elongation factor Tu GTP binding domain containing 2.	0.996
LOC107091769	ppie	ENSCVAP00000021451	ENSCVAP00000030591	Cwf21 domain-containing protein.	Peptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily.	0.644
LOC107091769	ppil1	ENSCVAP00000021451	ENSCVAP00000008351	Cwf21 domain-containing protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.823
LOC107091769	rbm22	ENSCVAP00000021451	ENSCVAP00000008787	Cwf21 domain-containing protein.	RNA binding motif protein 22.	0.911
LOC107091769	snrnp40	ENSCVAP00000021451	ENSCVAP00000005660	Cwf21 domain-containing protein.	Small nuclear ribonucleoprotein 40 (U5).	0.530