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ppih ppih SNRPN SNRPN gemin4 gemin4 snrpg snrpg snrpb2 snrpb2 cd2bp2 cd2bp2 lsm11 lsm11 lsm4 lsm4 SNRPD2 SNRPD2 SART1 SART1 Rbmx2 Rbmx2 LOC107083817 LOC107083817 gemin7 gemin7 sf3b2 sf3b2 snrpa snrpa LOC107081919 LOC107081919 lsm5 lsm5 sf3b5 sf3b5 lsm3 lsm3 ENSCVAP00000024722 ENSCVAP00000024722 gemin5 gemin5 snrpe snrpe ENSCVAP00000031045 ENSCVAP00000031045 snrpa1 snrpa1 trmt13 trmt13 ENSCVAP00000029121 ENSCVAP00000029121 lsm2 lsm2 inpp5d inpp5d LOC107081054 LOC107081054 htatsf1 htatsf1 txnl4b txnl4b prpf18 prpf18 prpf6 prpf6 Prpf8 Prpf8 ENSCVAP00000025291 ENSCVAP00000025291 gemin8 gemin8 prpf3 prpf3 clns1a clns1a usp39 usp39 lsm6 lsm6 snrpd3 snrpd3 txnl4a txnl4a rnpc3 rnpc3 gemin2 gemin2 sf3b1 sf3b1 ddx20 ddx20 ddx23 ddx23 snrnp200 snrnp200 lsm8 lsm8 snrpd1 snrpd1 lsm7 lsm7 strap strap LOC107098670 LOC107098670 kiaa2026 kiaa2026 Prpf4 Prpf4
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ppihPeptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (161 aa)
SNRPNSmall nuclear ribonucleoprotein-associated protein. (241 aa)
gemin4Gem (nuclear organelle) associated protein 4. (1031 aa)
snrpgSmall nuclear ribonucleoprotein G. (76 aa)
snrpb2Small nuclear ribonucleoprotein polypeptide B2. (220 aa)
cd2bp2CD2 (cytoplasmic tail) binding protein 2. (362 aa)
lsm11LSM11, U7 small nuclear RNA associated. (297 aa)
lsm4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (143 aa)
SNRPD2Small nuclear ribonucleoprotein Sm D2. (121 aa)
SART1Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (771 aa)
Rbmx2Uncharacterized protein. (58 aa)
LOC107083817Survival of motor neuron 1, telomeric. (284 aa)
gemin7Gem (nuclear organelle) associated protein 7. (126 aa)
sf3b2Splicing factor 3b, subunit 2. (848 aa)
snrpaSmall nuclear ribonucleoprotein polypeptide A. (273 aa)
LOC107081919Zgc:153119. (298 aa)
lsm5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
sf3b5Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
lsm3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
ENSCVAP00000024722Ig-like domain-containing protein. (150 aa)
gemin5Gem (nuclear organelle) associated protein 5. (1463 aa)
snrpeSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
ENSCVAP00000031045Uncharacterized protein. (115 aa)
snrpa1Small nuclear ribonucleoprotein polypeptide A. (250 aa)
trmt13tRNA methyltransferase 13 homolog. (493 aa)
ENSCVAP00000029121WD_REPEATS_REGION domain-containing protein. (174 aa)
lsm2U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (106 aa)
inpp5dInositol polyphosphate-5-phosphatase D. (1112 aa)
LOC107081054Small nuclear ribonucleoprotein Sm D2. (118 aa)
htatsf1HIV-1 Tat specific factor 1. (450 aa)
txnl4bThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (149 aa)
prpf18PRP18 pre-mRNA processing factor 18 homolog (yeast). (350 aa)
prpf6PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (969 aa)
Prpf8MPN domain-containing protein. (322 aa)
ENSCVAP00000025291Uncharacterized protein. (465 aa)
gemin8Gem (nuclear organelle) associated protein 8. (203 aa)
prpf3PRP3 pre-mRNA processing factor 3 homolog (yeast). (695 aa)
clns1aChloride channel, nucleotide-sensitive, 1A. (251 aa)
usp39Ubiquitin specific peptidase 39. (498 aa)
lsm6LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (80 aa)
snrpd3Small nuclear ribonucleoprotein Sm D3. (127 aa)
txnl4aThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
rnpc3RNA-binding region (RNP1, RRM) containing 3. (512 aa)
gemin2Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family. (253 aa)
sf3b1Splicing factor 3b, subunit 1. (1268 aa)
ddx20DEAD (Asp-Glu-Ala-Asp) box polypeptide 20; Belongs to the DEAD box helicase family. (767 aa)
ddx23DEAD (Asp-Glu-Ala-Asp) box polypeptide 23. (802 aa)
snrnp200Small nuclear ribonucleoprotein 200 (U5). (2056 aa)
lsm8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
snrpd1Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
lsm7LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (108 aa)
strapSerine/threonine kinase receptor associated protein. (277 aa)
LOC107098670U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (131 aa)
kiaa2026Bromo domain-containing protein. (2152 aa)
Prpf4WD_REPEATS_REGION domain-containing protein. (123 aa)
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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