(44 nodes) PAS domain network (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	per1	Period circadian clock 1b. (1445 aa)
	LOC107083329	Period circadian clock 3. (1324 aa)
	per2	PAS domain-containing protein. (1497 aa)
	LOC107104192	Aryl hydrocarbon receptor nuclear translocator-like 2. (579 aa)
	LOC107093901	Nuclear receptor coactivator 3. (1503 aa)
	LOC107088815	Aryl hydrocarbon receptor nuclear translocator. (787 aa)
	kcnh8	Potassium voltage-gated channel, subfamily H (eag-related), member 8. (795 aa)
	kcnh4	Potassium voltage-gated channel, subfamily H (eag-related), member 4b. (877 aa)
	LOC107084865	Potassium voltage-gated channel, subfamily H (eag-related), member 5b. (1010 aa)
	LOC107093492	Uncharacterized protein. (916 aa)
	LOC107081655	Uncharacterized protein. (759 aa)
	arnt2	Aryl-hydrocarbon receptor nuclear translocator 2. (722 aa)
	LOC107087809	Uncharacterized protein. (667 aa)
	LOC107097611	Uncharacterized protein. (941 aa)
	LOC107090280	Nuclear receptor coactivator. (1501 aa)
	Ncoa1	Uncharacterized protein. (370 aa)
	NPAS3	Neuronal PAS domain protein 3. (318 aa)
	npas4	Neuronal PAS domain protein 4a. (960 aa)
	LOC107082890	Uncharacterized protein. (975 aa)
	LOC107098020	Aryl hydrocarbon receptor nuclear translocator-like 1a. (586 aa)
	ncoa2	Nuclear receptor coactivator. (1451 aa)
	LOC107090627	Endothelial PAS domain protein 1b. (877 aa)
	LOC107083335	Period circadian clock 2. (1485 aa)
	ahrr	Uncharacterized protein. (680 aa)
	epas1	Uncharacterized protein. (432 aa)
	kcnh2	Uncharacterized protein. (1100 aa)
	LOC107092283	Aryl hydrocarbon receptor 2. (919 aa)
	LOC107092269	Aryl hydrocarbon receptor 1b. (828 aa)
	ENSCVAP00000024069	Potassium voltage-gated channel, subfamily H (eag-related), member 3. (386 aa)
	ARNTL2	Aryl hydrocarbon receptor nuclear translocator like 2. (612 aa)
	ENSCVAP00000026471	Uncharacterized protein. (290 aa)
	pde8b	Phosphodiesterase. (870 aa)
	LOC107097609	Aryl hydrocarbon receptor 1b. (922 aa)
	LOC107093636	Nuclear receptor coactivator. (1444 aa)
	LOC107092506	Hypoxia inducible factor 1 subunit alpha, like. (660 aa)
	LOC107094181	Neuronal PAS domain protein 1. (782 aa)
	LOC107087869	Neuronal PAS domain protein 2. (855 aa)
	LOC107091784	Potassium voltage-gated channel, subfamily H (eag-related), member 4a. (1062 aa)
	hif1a	Hypoxia inducible factor 1 subunit alpha a. (752 aa)
	LOC107089888	Potassium voltage-gated channel, subfamily H (eag-related), member 1a. (971 aa)
	CLOCK	Clock circadian regulator a. (826 aa)
	kcnh6	Potassium voltage-gated channel, subfamily H (eag-related), member 6a. (1209 aa)
	LOC107085353	Phosphodiesterase. (818 aa)
	sim1	Uncharacterized protein. (752 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARNTL2	CLOCK	ENSCVAP00000024304	ENSCVAP00000009127	Aryl hydrocarbon receptor nuclear translocator like 2.	Clock circadian regulator a.	0.806
ARNTL2	ENSCVAP00000026471	ENSCVAP00000024304	ENSCVAP00000026471	Aryl hydrocarbon receptor nuclear translocator like 2.	Uncharacterized protein.	0.421
ARNTL2	LOC107081655	ENSCVAP00000024304	ENSCVAP00000000950	Aryl hydrocarbon receptor nuclear translocator like 2.	Uncharacterized protein.	0.401
ARNTL2	LOC107083329	ENSCVAP00000024304	ENSCVAP00000004498	Aryl hydrocarbon receptor nuclear translocator like 2.	Period circadian clock 3.	0.686
ARNTL2	LOC107083335	ENSCVAP00000024304	ENSCVAP00000021780	Aryl hydrocarbon receptor nuclear translocator like 2.	Period circadian clock 2.	0.686
ARNTL2	LOC107087809	ENSCVAP00000024304	ENSCVAP00000002470	Aryl hydrocarbon receptor nuclear translocator like 2.	Uncharacterized protein.	0.770
ARNTL2	LOC107087869	ENSCVAP00000024304	ENSCVAP00000031929	Aryl hydrocarbon receptor nuclear translocator like 2.	Neuronal PAS domain protein 2.	0.806
ARNTL2	LOC107090627	ENSCVAP00000024304	ENSCVAP00000020962	Aryl hydrocarbon receptor nuclear translocator like 2.	Endothelial PAS domain protein 1b.	0.532
ARNTL2	LOC107092269	ENSCVAP00000024304	ENSCVAP00000023020	Aryl hydrocarbon receptor nuclear translocator like 2.	Aryl hydrocarbon receptor 1b.	0.559
ARNTL2	LOC107092283	ENSCVAP00000024304	ENSCVAP00000023011	Aryl hydrocarbon receptor nuclear translocator like 2.	Aryl hydrocarbon receptor 2.	0.559
ARNTL2	LOC107092506	ENSCVAP00000024304	ENSCVAP00000030875	Aryl hydrocarbon receptor nuclear translocator like 2.	Hypoxia inducible factor 1 subunit alpha, like.	0.532
ARNTL2	LOC107093492	ENSCVAP00000024304	ENSCVAP00000000043	Aryl hydrocarbon receptor nuclear translocator like 2.	Uncharacterized protein.	0.806
ARNTL2	LOC107094181	ENSCVAP00000024304	ENSCVAP00000031196	Aryl hydrocarbon receptor nuclear translocator like 2.	Neuronal PAS domain protein 1.	0.532
ARNTL2	LOC107097609	ENSCVAP00000024304	ENSCVAP00000027173	Aryl hydrocarbon receptor nuclear translocator like 2.	Aryl hydrocarbon receptor 1b.	0.559
ARNTL2	LOC107097611	ENSCVAP00000024304	ENSCVAP00000011500	Aryl hydrocarbon receptor nuclear translocator like 2.	Uncharacterized protein.	0.559
ARNTL2	NPAS3	ENSCVAP00000024304	ENSCVAP00000015002	Aryl hydrocarbon receptor nuclear translocator like 2.	Neuronal PAS domain protein 3.	0.532
ARNTL2	ahrr	ENSCVAP00000024304	ENSCVAP00000022362	Aryl hydrocarbon receptor nuclear translocator like 2.	Uncharacterized protein.	0.559
ARNTL2	epas1	ENSCVAP00000024304	ENSCVAP00000022693	Aryl hydrocarbon receptor nuclear translocator like 2.	Uncharacterized protein.	0.532
ARNTL2	hif1a	ENSCVAP00000024304	ENSCVAP00000008744	Aryl hydrocarbon receptor nuclear translocator like 2.	Hypoxia inducible factor 1 subunit alpha a.	0.532
ARNTL2	npas4	ENSCVAP00000024304	ENSCVAP00000015434	Aryl hydrocarbon receptor nuclear translocator like 2.	Neuronal PAS domain protein 4a.	0.770